Biodiversitas Journal of Biological Diversity
Vol. 21 No. 6 (2020)

Genetic characterization based on the D-loop MtDNA and the TSPY genes of the Dwarf Siamang (Hylobates klossii) of Mentawai Island, Indonesia

Rizka Hasanah (Primatology Program, Graduate School, Institut Pertanian Bogor. Jl. Lodaya II No. 5, Bogor 16151, West Java, Indonesia)
UUS SAEPULOH (Primate Research Center, LPPM IPB. Institut Pertanian Bogor. Jl. Lodaya II No. 5, Bogor 16151, West Java, Indonesia)
DYAH PERWITASARI-FARAJALLAH (Primate Research Center, LPPM IPB. Institut Pertanian Bogor. Jl. Lodaya II No. 5, Bogor 16151, West Java, Indonesia)
WALBERTO SINAGA (Taman Safari Indonesia. Jl. Kapten Harun Kabir No. 724, Cisarua, Bogor 16750, West Java, Indonesia)
YOHANA TRI HASTUTI (Taman Safari Indonesia. Jl. Kapten Harun Kabir No. 724, Cisarua, Bogor 16750, West Java, Indonesia)
DONDIN SAJUTHI (Departement of Pathology and Reproduction Clinic, Faculty of Veterinary Medicine, Institut Pertanian Bogor. Jl. Agatis Kampus IPB Dramaga, Bogor 16680, West Java, Indonesia)



Article Info

Publish Date
02 Jun 2020

Abstract

Abstract. Hasanah R, Saepuloh U, Perwitasari-Farajallah D, Sinaga W, Hastuti Y, Sajuthi D. 2020. Genetic characterization based on the D-loop MtDNA and the TSPY genes of the Dwarf Siamang (Hylobates klossii) of Mentawai Island, Indonesia. Biodiversitas 21: 2854-2861. Hylobates klossii is an endemic primate on the Mentawai Island, Indonesia that categorized as endangered species due to fragmentation, illegal hunting, and habitat loss. This study aimed to analyze the genetic characterization of H. klossii based on maternal and paternal lineages. The samples were collected from TSI (Bogor, Indonesia) cage consist of two males and two females (blood and fecal of four individuals) and Siberut Island, Mentawai, West Sumatra, Indonesia from one unknown gender (one individual fecal sample). PCR amplification was carried out on DNA and cDNA samples using specific primers for D-loop MtDNA and TSPY genes. The amplicon was analyzed with MEGA-7. The dimensional structure model of the TSPY protein was determined using I-TASSER and visualized with PyMol. The maternal analysis showed five samples consisted of four haplotypes revealed that Nam-nam and April were identic with 0% genetic distance. It’s revealed that Nam-nam and April were mother and son. The paternal analysis of two H. klossii males revealed that April was the closest relative to H. muelleri (99.56% identity) and Gou-gou to H. klossii (100% identity). Characterization of partial TSPY gene (990 bp) of April and Gou-Gou indicated four amino acids mutation, causing the shift in-amino acid structure position. The results assumed that April was a cross-breeding between H. klossii female and H. muelleri male. This genetic characterization is expected to support the conservation efforts through recommendations for good management in H. klossii preservation.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...