Biodiversitas Journal of Biological Diversity
Vol. 21 No. 8 (2020)

Genetic diversity of exotic and local eggplants (Solanum spp.) cultivated in Côte d’Ivoire based on ISSR markers

N'Guessan Olivier Konan (Laboratory of Crop Improvement, Agroforestry Unit, Jean Lorougnon Guédé University. BP 236 Daloa, Côte d’Ivoire)
MARIE ANGE AKAFFOU (Laboratory of Crop Improvement, Agroforestry Unit, Jean Lorougnon Guédé University. BP 236 Daloa, Côte d’Ivoire)
LÉONARD KOUADIO (Laboratory of Crop Improvement, Agroforestry Unit, Jean Lorougnon Guédé University. BP 236 Daloa, Côte d’Ivoire)
DOFFOU SÉLASTIQUE AKAFFOU (Laboratory of Crop Improvement, Agroforestry Unit, Jean Lorougnon Guédé University. BP 236 Daloa, Côte d’Ivoire)
GUY MERGEAI (Laboratory of Tropical Agroecology, Gembloux Agro-Bio Tech, Liège University. 2 passage des Déportés, B-5030 Gembloux, Belgium)



Article Info

Publish Date
21 Jul 2020

Abstract

Abstract. Konan NO, Akaffou MA, Kouadio L, Akaffou DS, Mergeai G. 2020. Genetic diversity of exotic and local eggplants (Solanum spp.) cultivated in Côte d’Ivoire based on ISSR markers. Biodiversitas 21: 3651-3658. Eggplants are important vegetables in Côte d'Ivoire. Despite an increase in the cultivation of exotic genotypes and their progressive dominance over local cultivars, which could represent a threat of genetic erosion, there are not enough molecular data available on the genetic diversity of the eggplants currently cultivated in this country. This study is a contribution to the knowledge of the genetic diversity of the current eggplant cultivars grown in Côte d’Ivoire. It aimed to assess the genetic variation of nine exotic and local eggplants commonly cultivated in Côte d'Ivoire, using five inter-simple sequence repeat (ISSR) primers. The results revealed for the exotic cultivars 42 ISSR loci of which 31 were polymorphic (73.81 %), and for local cultivars 51 loci of which 49 (96.08%) were polymorphic. The Nei’s genetic diversity and Shannon’s information index of local cultivars (He = 0.3333 and I = 0.4863) were higher than those of exotic cultivars (He = 0.2000 and I = 0.2971). The Gst value and the AMOVA analysis found more than 70% of the total genetic diversity within the groups. The Jaccard’s dissimilarity coefficients between the cultivars, ranged from 0.324 to 0.966 with an average of 0.741. The clustering of genotypes with the neighbor-joining unrooted tree and PCoA analysis differentiated three main clusters with exotic cultivars grouped in cluster I and local cultivars in cluster II and III. In view of these results, the local eggplants had higher genetic diversity and constitute an interesting germplasm which needs to be conserved for potential breeding programs.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...