Biodiversitas Journal of Biological Diversity
Vol. 21 No. 8 (2020)

Estimation of bacterial number in the water, sediment and biofilm of Badek and Mewek River (Malang, Indonesia) using Plate Count and eDNA Method

Devi Ulinuha (Program of Aquatic Resource Management, Faculty of Marine Sciences and Fisheries, Universitas Udayana. Jl. Raya Kampus Unud Jimbaran, Badung 80361, Bali, Indonesia)
Sri Andayani (Faculty of Fisheries and Marine Sciences, Universitas Brawijaya. Jl. Veteran No.16, Malang 65145, East Java, Indonesia)
Asus Maizar Suryanto Hertika (Faculty of Fisheries and Marine Sciences, Universitas Brawijaya. Jl. Veteran No.16, Malang 65145, East Java, Indonesia)
Yuni Kilawati (Faculty of Fisheries and Marine Sciences, Universitas Brawijaya. Jl. Veteran No.16, Malang 65145, East Java, Indonesia)



Article Info

Publish Date
31 Jul 2020

Abstract

Abstract. Ulinuha D, Andayani S, Hertika AMS, Kilawati Y. 2020. Estimation of bacterial number in the water, sediment, and biofilm of Badek and Mewek River (Malang, Indonesia) using Plate Count and eDNA Method. Biodiversitas 21: 3832-3836.  Several methods have been developed to quantify bacterial numbers in the environment, but the studies is still continued to provide the most effective and efficient method. This study was aimed to compare the capacities of two different methods (Plate Count and eDNA Method) to estimate the bacterial number in the water, sediment, and biofilm of Badek and Mewek River (Malang-Indonesia). The Plate Count Method was carried out on a Plate Count Agar (PCA) which was incubated for 24 hours at 37oC. The eDNA method was performed by slow agitation (1,800 rpm) to extract the environmental DNA of bacteria. Quantification of bacteria was obtained from the eDNA band intensity after electrophoresis in 1% gel agarose electrophoresis. Smartladder was used as a marker for the eDNA Method. The result showed that the eDNA Method was efficient for the estimation of bacterial numbers in the sediment and biofilm of Badek and Mewek River. However, this method was not suitable for estimating bacterial numbers in the water.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...