Biodiversitas Journal of Biological Diversity
Vol. 21 No. 11 (2020)

Genetic variation and identification of single nucleotide polymorphism of insulin-like growth factor- 1 gene in Tilapia guineensis

Esther Ukenye (Department of Biotechnology, Nigerian Institute for Oceanography and Marine Research. Victoria Island, Lagos, Nigeria)
IWALEWA MEGBOWON (Department of Biotechnology, Nigerian Institute for Oceanography and Marine Research. Victoria Island, Lagos, Nigeria)
OLALEKAN OGUNTADE (Department of Biotechnology, Nigerian Institute for Oceanography and Marine Research. Victoria Island, Lagos, Nigeria)
TOPE OKETOKI (Department of Biotechnology, Nigerian Institute for Oceanography and Marine Research. Victoria Island, Lagos, Nigeria)
OLUWAFEMI AMUSA (Department of Cell Biology and Genetics, University of Lagos. Lagos, Nigeria)
ADEOLA USMAN (Department of Biotechnology, Nigerian Institute for Oceanography and Marine Research. Victoria Island, Lagos, Nigeria)
BALKEES SOKENU (Department of Biotechnology, Nigerian Institute for Oceanography and Marine Research. Victoria Island, Lagos, Nigeria)
RAKIYA ADELEKE (Department of Biotechnology, Nigerian Institute for Oceanography and Marine Research. Victoria Island, Lagos, Nigeria)
BAWA JOSEPH (Department of Biotechnology, Nigerian Institute for Oceanography and Marine Research. Victoria Island, Lagos, Nigeria)
CHRISTIAN OMATAH (Department of Biotechnology, Nigerian Institute for Oceanography and Marine Research. Victoria Island, Lagos, Nigeria)



Article Info

Publish Date
23 Oct 2020

Abstract

Abstract. Ukenye E, Megbowon I, Oguntade O, Oketoki T, Amusa O, Usman A, Sokenu B, Adeleke R, Joseph B, Omatah C. 2020. Genetic variation and identification of single nucleotide polymorphism of insulin-like growth factor- 1 gene in Tilapia guineensis Biodiversitas 21: 5317-5321. Tilapia guineensis is an important cichlid species of West African coastal waters with good nutritional, economic, and aquaculture relevance. The knowledge of the genetic basis of variation in growth traits in Tilapia fish is of great importance to support genetic improvement in the context of aquaculture. In this study, regions of the Tilapia guineensis IGF-1 gene were sequenced, aligned and compared across populations to identify single nucleotide polymorphism and genetic diversity among four populations of T. guineensis in South-west Nigerian coastal waters. A total of thirty-four SNPs were identified across the studied populations and were detected in the forward reaction with twenty-two transversions and twelve transitions. Badagry population showed the highest genetic diversity with the highest molecular diversity indices; number of polymorphic sites, pairwise differences, number of segregating sites and nucleotide diversity while the least diverse population was Pepe. Analysis of molecular variance (AMOVA) revealed that genetic variation was mostly within populations. This finding provides more information regarding variation in insulin growth factor I of T. guineensis and will encourage association study for production traits that will inform useful selection marker for breeding program.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...