Biodiversitas Journal of Biological Diversity
Vol. 22 No. 4 (2021)

DNA barcode of Enggano hill myna, Gracula religiosa enganensis (Aves: Sturnidae) based on mitochondrial DNA cytochrome oxidase subunit I

JARULIS JARULIS (Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Bengkulu. Jl. WR. Supratman, Kandang Limun, Bengkulu 38371, Bengkulu, Indonesia)
CHOIRUL MUSLIM (Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Bengkulu. Jl. WR. Supratman, Kandang Limun, Bengkulu 38371, Bengkulu, Indonesia)
SANTI NURUL KAMILAH (Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Bengkulu. Jl. WR. Supratman, Kandang Limun, Bengkulu 38371, Bengkulu, Indonesia)
AHMAT FAKHRI UTAMA (Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Bengkulu. Jl. WR. Supratman, Kandang Limun, Bengkulu 38371, Bengkulu, Indonesia)
DEBY PERMANA (Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Bengkulu. Jl. WR. Supratman, Kandang Limun, Bengkulu 38371, Bengkulu, Indonesia)
MELISA MAYANG SARI (Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Bengkulu. Jl. WR. Supratman, Kandang Limun, Bengkulu 38371, Bengkulu, Indonesia)
ALEX HADI PRAYITNO (Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Bengkulu. Jl. WR. Supratman, Kandang Limun, Bengkulu 38371, Bengkulu, Indonesia)
IZUL MIFTAKHUL JANNAH (Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Bengkulu. Jl. WR. Supratman, Kandang Limun, Bengkulu 38371, Bengkulu, Indonesia)



Article Info

Publish Date
07 Mar 2021

Abstract

Abstract. Jarulis, Muslim C, Kamilah SN, Utama AF, Permana D, Sari MM, Prayitno AH, Jannah IM. 2021. DNA barcode of Enggano hill myna, Gracula religiosa enganensis (Aves: Sturnidae) based on mitochondrial DNA cytochrome oxidase subunit I. Biodiversitas 22: 1635-1643. The sharp decline of the Enggano hill myna population due to illegal trading and habitat degradation needs to be our concern to prevent this bird from extinction. Taxonomically, Enggano hill myna is referred to as a sub-species, but this has not been confirmed by genetic data. We have sequenced seventeen Enggano hill myna mitochondrial DNA COI genes to describe their genetic identity (barcode), genetic distances, and phylogeny. DNA genome from seventeen blood samples was isolated with DNeasy® Blood and Tissue Kit Qiagen, while PCR amplification was performed using a pair primers, namely COIGRF (5'-TTCTGATTCTTTGGCCATCC-3') and COIGRR (5'-GTTGGAAGGCTTTGCGTTTA-3'). We used Clustal W alignment in MEGA 10.2.2 software to search single nucleotide polymorphisms. Genetic distance was analyzed by using the Kimura 2-parameter, and the phylogenetic tree was reconstructed with Neighbor-Joining models. We found 98.60% conservative sites, 0.69% parsimony sites, and 0.83% singleton sites from the 716 bp sequence. The highest nucleotide composition was cytosine (32.20%), and the lowest was guanine (16.80%), followed by 49% GC content. Seven SNP sites were found in 716 bp COI gene sequences of seventeen individuals. The genetic distance between Enggano hill myna individuals was ranged from 0.0-0.8%, and all Enggano hill myna individuals separated from Chinese and Indian populations in the phylogenetic tree with a genetic distance of 0.9% and 1.1%. Our data suggest that the Enggano hill myna population is still classified as a sub-species. The COI gene sequences that we found can be used to quickly identify this species and are also important to prevent illegal trading in Indonesia.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...