Biodiversitas Journal of Biological Diversity
Vol. 22 No. 6 (2021)

Genetic diversity among 24 clones of robusta coffee in Lampung based on RAPD markers

Sri Ramadiana (Department of Agronomy and Horticulture, Faculty of Agriculture, Universitas Lampung. Jl. Sumantri Brojonegoro No. 1, Bandar Lampung 35145, Lampung, Indonesia)
Dwi Hapsoro (Department of Agronomy and Horticulture, Faculty of Agriculture, Universitas Lampung. Jl. Sumantri Brojonegoro No. 1, Bandar Lampung 35145, Lampung, Indonesia)
Rusdi Evizal (Department of Agronomy and Horticulture, Faculty of Agriculture, Universitas Lampung. Jl. Sumantri Brojonegoro No. 1, Bandar Lampung 35145, Lampung, Indonesia)
Kukuh Setiawan (Department of Agronomy and Horticulture, Faculty of Agriculture, Universitas Lampung. Jl. Sumantri Brojonegoro No. 1, Bandar Lampung 35145, Lampung, Indonesia)
Agus Karyanto (Department of Agronomy and Horticulture, Faculty of Agriculture, Universitas Lampung. Jl. Sumantri Brojonegoro No. 1, Bandar Lampung 35145, Lampung, Indonesia)
Yusnita Yusnita (Department of Agronomy and Horticulture, Faculty of Agriculture, Universitas Lampung. Jl. Sumantri Brojonegoro No. 1, Bandar Lampung 35145, Lampung, Indonesia)



Article Info

Publish Date
12 May 2021

Abstract

Abstract. Ramadiana S, Hapsoro D, Evizal R, Setiawan K, Karyanto A, Yusnita. 2021. Genetic diversity among 24 clones of robusta coffee in Lampung based on RAPD markers. Biodiversitas 22: 3122-3129. This study aimed to estimate the genetic diversity among 24 clones of Robusta coffee from Lampung, Indonesia, by use of RAPD markers. The clones consisted of 18 local and 6 BP clones. These BP clones were developed from a breeding program of The Indonesian Coffee and Cocoa Research Institute. Genomic DNAs extracted from these clones were subjected to polymerase chain reaction and the amplified products were run using gel electrophoresis. Eleven random primers produced clear, reproducible, scorable bands. Fifty-four of 86 bands showed polymorphism and were used to construct a dendrogram based on UPGMA Jaccard's Similarity Coefficients. The genetic base of the population was narrow (average genetic similarity 68.4%), ranging from 26-93%. The genetic similarity of the local clones was higher than that of BP clones. The clones were clustered into five groups. Group 1 contained one clone (BP 534), while each of Group II-V contained more than one clone. The average genetic similarity of BP 534 to each clone of Group II-V was 41%. The genetic similarity of clones in Group II, III, IV, and V were 55.5%, 43.0%, 81.1%, and 80.1%, respectively. This research should be very useful for selecting parents in a breeding program to produce better clones of Robusta coffee.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...