Biodiversitas Journal of Biological Diversity
Vol. 23 No. 1 (2022)

Universal primer design for crustacean and bivalve-mollusc authenticity based on cytochrome-b gene: Universal primer for crustacean and bivalve-mollusc

DWIYITNO DWIYITNO (Research and Development Center for Marine and Fisheries Product Processing and Biotechnology. Jl. K.S. Tubun Petamburan VI, Jakarta Pusat 10260, Jakarta , Indonesia)
STEFAN HOFFMAN (Institute for Agricultural and Fisheries Research (ILVO). Ankerstraat 1, Oostende 8400, Belgium)
KOEN PARMENTIER (Institute for Agricultural and Fisheries Research (ILVO). Ankerstraat 1, Oostende 8400, Belgium)
CHRIS VAN KEER (KU Leuven Technologie Campus Gent. Gebroeders Desmetstraat 1, Gent 9000, Belgium)



Article Info

Publish Date
01 Jan 2022

Abstract

Abstract. Dwiyitno D, Hoffman S, Parmentier K, Keer CV. 2021. Universal primer design for crustacean and bivalve-mollusc authenticity based on cytochrome-b gene. Biodiversitas 23: 17-24. Fish and seafood authenticity is important to support traceability practices and protect the public from economic fraud and adulteration. Molecular-based techniques of PCR are known as the most common methods for identifying seafood species. Nevertheless, these techniques rely on the appropriate primer set designed to amplify specific DNA fragments on targeted species. For efficiency application on a wide range of species, a universal primer set is more valuable than a specific primer. The present study developed universal primers, especially for identifying crustaceans and molluscs based on the cytochrome b mitochondrial DNA (Cyt b). The initial primer pair of CytBL1/CytBH originally designed for fish species was applicable to amplify the Cyt b gene on most selected fish samples, but not for crustacean and mollusc samples. Based on annealing profile, sequence evaluation (92-100% similarity), and RT-PCR analysis, the universal primer couple of CytBL1C/CytBHW designed in the present study potentially applied to identify crustacean and mollusc samples, especially shrimp and bivalve-mollusc.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...