Biodiversitas Journal of Biological Diversity
Vol. 23 No. 2 (2022)

Insights into the genome sequence of the glyphosate-degrading bacterium Enterobacter sp. Bisph1

OUAFA BENSERRADJ (Institute of Sciences and Technology, Department of Natural and Life Sciences, University Center Abdelhafid Boussouf. Mila 43000, Algeria)
OUIDED BENSLAMA (Laboratory of Natural Substances, Biomolecules and Biotechnological Applications, Department of Natural and Life Sciences, Larbi Ben M’Hidi University. Oum El Bouaghi, 04000, Algeria)
SANA GHORRI (Laboratory of Mycology, Biotechnology and Antimicrobial Activity, Department of Microbiology, University Mentouri of Constantine. Ain Elbey, Constantine 25017, Algeria)



Article Info

Publish Date
03 Feb 2022

Abstract

Abstract. Benserradj O, Benslama O, Ghorri S. 2021. Insights into the genome sequence of the glyphosate-degrading bacterium Enterobacter sp. Bisph1. Biodiversitas 23: 817-882. Glyphosate is by far the most extensively utilized herbicide in the world, and because of its negative effects on the environment and animal health, finding microorganisms with the ability to degrade this herbicide is one of the scientists’ top priorities. Enterobacter sp. Bisph1 was isolated during prospecting glyphosate-degrading bacteria from a sandy soil of the region of Biskra in Algeria. To better understand the involvement of this strain in the degradation of glyphosate, a sequencing of the 4.5 MB genome of Enterobacter sp. Bisph1, as well as an annotation, and analysis of its genome sequence were performed in this study. Genomic DNA was sequenced on a MiSeq sequencer llumina using paired-end sequencing with the Nextera XT protocol. The genome of strain Enterobacter sp. Bisph1 comprises one chromosome of 4,578,487 bp with a GC content of 53.6%. Its 4,330 genes (78.13%) were assigned a putative function. The genome contains two intact phages and no CRISPR was found. The genome inspection also revealed the presence of the carbon-to-phosphorus (C-P) bond lyase coding genes clusters that consists of eight genes phnFHIJKLMP. The draft genome of the Enterobacter sp. Bisph1 provides insight into the role of this strain as an important agent of bioremediation of glyphosate by examining the genes known to encode the biodegradation enzymes of this herbicide. The sequencing of the genome of Bisph1 allows a better understanding of the taxonomy of this strain within the Enterobacteriaceae family.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...