Biodiversitas Journal of Biological Diversity
Vol. 23 No. 3 (2022)

Genetic diversity analysis among 123 accessions of castor (Ricinus communis L.) using SSR marker and its association to agronomic traits

TANTRI DYAH AYU ANGGRAENI (Indonesian Sweetener and Fiber Crops Research Institute, Indonesian Agency for Agricultural and Research Development. Jl. Raya Karangploso, Malang 65145, East Java, Indonesia)
BUDI WALUYO (Department of Agronomy, Faculty of Agriculture, Universitas Brawijaya. Jl. Veteran, Malang 65145, East Java, Indonesia)
ARIFIN NOOR SUGIHARTO (Department of Agronomy, Faculty of Agriculture, Universitas Brawijaya. Jl. Veteran, Malang 65145, East Java, Indonesia)
KUSWANTO KUSWANTO (Department of Agronomy, Faculty of Agriculture, Universitas Brawijaya. Jl. Veteran, Malang 65145, East Java, Indonesia)



Article Info

Publish Date
24 Feb 2022

Abstract

Abstract. Anggraeni TDA, Waluyo B, Sugiharto AN, Kuswanto. 2022. Genetic diversity analysis among 123 accessions of castor (Ricinus communisL.) using SSR marker and its association to agronomic traits. Biodiversitas 23: 1211-1221. Castor (Ricinus communis L.) breeding program targets to create dwarf-type plants suitable for mechanical harvesting. Characterization of plantsusing morphological and molecular markers can enhance the successful breeding program. This studyaimed to investigate the diversity of castor accessionsusing Simple Sequence Repeat (SSR) markers and find the SSR markers that are significantly associated with the agronomic traits. The castor germplasm collection consisting of 123 accessions from the islands throughout Indonesia, breeding lines, and introducedaccessions displayed a moderate genetic diversity. The germplasm collection showed high variation in plant height, node length average, number of nodes, 100 seed weight, and oil content. The association analysis using GLM (General Linear Model) and MLM (Mixed Linear Model) could detect six associations between SSR marker alleles and agronomic traits. Among the marker alleles, two marker alleles had an overlap association. RcSSR-12_175 had an association with plant height and flowering day, RcSSR-23_113 had an association with node length average and branch number, and RcSSR-4_125 had an association with seed weight/raceme. This finding could provide information on Indonesia’s castor accession status. The linked-trait SSR markers are useful in marker-assisted selection for breeding high yield dwarf type-castor.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...