Biodiversitas Journal of Biological Diversity
Vol. 23 No. 3 (2022)

Molecular identification of Eurycoma longifolia Jack from Sumatra, Indonesia using trnL-F region

KUSUMADEWI SRI YULITA (Research Centre for Biology, National Agency for Research and Innovation. Jl. Raya Jakarta – Bogor Km. 46, Bogor 16911, West Java, Indonesia)
ARIDA SUSILOWATI (Faculty of Forestry, Universitas Sumatera Utara. Jl. Padang Bulan, Medan 20155, North Sumatra, Indonesia)
HENTI HENDALASTUTI RACHMAT (Forest Research and Development Center, The Ministry of Environment and Forestry. Jl. Gunung Batu No. 5, Bogor, 16118, West Java, Indonesia)
SUSILA SUSILA (Research Centre for Biology, National Agency for Research and Innovation. Jl. Raya Jakarta – Bogor Km. 46, Bogor 16911, West Java, Indonesia)
ASEP HIDAYAT (Forest Research and Development Center, The Ministry of Environment and Forestry. Jl. Gunung Batu No. 5, Bogor, 16118, West Java, Indonesia)
FIFI GUS DWIYANTI (Departement of Silviculture, Faculty of Forestry, Institut Pertanian Bogor. Jl. Ulin, IPB Dramaga Campus, Bogor 16680, West Java, Indonesia)



Article Info

Publish Date
01 Mar 2022

Abstract

Abstract. Yulita KS, Susilowati A, Rachmat HH, Susila, Hidayat A, Dwiyanti FG. 2022. Molecular identification of Eurycoma longifolia Jack from Sumatra, Indonesia using trnL-F region. Biodiversitas 23: 1374-1382. Eurycoma longifolia Jack (Simaroubaceae) or pasak bumi is a popular medicinal plant from Southeast Asia’s rainforests that is used as an aphrodisiac, antimicrobial, anti-malaria antidiabetic, antiulcer, and anticancer agent. However, the increasing demand for this species for medicinal industries has led to illegal export in Indonesia. This study aimed to determine the specific genetic variation and develop DNA barcode using trnL-Fregion for E. longifolia originating from Sumatra, Indonesia. Twenty-two samples of the species were collected from four locations in Sumatra. An aligned sequence of the trnL-Fwas 960 bp with an A/T rich region (A: 30.2%, T: 34.5%, C: 16.7%, and G: 18.7%). The homology search using BLASTn of the GenBank NCBI showed that the nucleotide composition of the species was similar (99.9%) to the partial trnL-Fregion of E. longifolia MH751519 and E. apiculata GU593014. Close examination of the gene structure and composition showed that the DNA sequences have five nucleotides variations that were not possessed by the reference E. longifolia, and other taxa used. The obtained variations occurred mostly in the trnL intron region, and the phylogenetic analysis showed that the correct identity of the species of the samples by their position was at a similar clade as the other accessions of E. longifolia.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...