Biodiversitas Journal of Biological Diversity
Vol. 23 No. 11 (2022)

Short Communication: Genetic similarity analysis of in vitro cultivated pineapple (Ananas comosus) from Sipahutar, North Sumatra, Indonesia using ISSR markers

FAUZIYAH HARAHAP (Department of Biology, Universitas Negeri Medan. Jl. Willem Iskandar Psr. V, Medan 20221, North Sumatra, Indonesia)
NUSYIRWAN NUSYIRWAN (Department of Biology, Universitas Negeri Medan. Jl. Willem Iskandar Psr. V, Medan 20221, North Sumatra, Indonesia)
ANNISA AFIVA (Department of Biology, Universitas Negeri Medan. Jl. Willem Iskandar Psr. V, Medan 20221, North Sumatra, Indonesia)
EKO PRASETYA (Department of Biology, Universitas Negeri Medan. Jl. Willem Iskandar Psr. V, Medan 20221, North Sumatra, Indonesia)
CICIK SURIANI (Department of Biology, Universitas Negeri Medan. Jl. Willem Iskandar Psr. V, Medan 20221, North Sumatra, Indonesia)
RIFA FADHILLAH MUNIFAH HASIBUAN (International Environmental Agricultural Science, Tokyo University of Agriculture and Technology. Tokyo-Fuchu-Harumicho, 3-Chrome 8-1, Tokyo, Japan)
ROEDHY POERWANTO (Center for Tropical Horticulture Studies, Institut Pertanian Bogor. Jl. Raya Pajajaran, Bogor 16143, West Java, Indonesia)



Article Info

Publish Date
26 Nov 2022

Abstract

Abstract. Harahap F, Nusyirwan N, Afiva A, Prasetya E, Suriani C, Hasibuan RFM, Poerwanto R. 2022. Short Communication: Genetic similarity analysis of in vitro cultivated pineapple (Ananas comosus) from Sipahutar, North Sumatra, Indonesia using ISSR markers. Biodiversitas 23: 5623-5628. Sipahutar pineapple from North Sumatra, Indonesia, is considered difficult to breed, resulting in a lack of seed availability. However, tissue culture allows the emergence of somaclonal variations, especially in plantlets undergoing several subculture stages. This study aimed to identify somaclonal variations in Sipahutar pineapple seedlings generated from in vitro culture using Inter Simple Sequence Repeat (ISSR) markers. Fifteen accessions were used in this study consisting of Sipahutar pineapple grown in its original environment, a laboratory environment, acclimatized, and in vitro cultured. Total of 10 primers, of which seven primers detected polymorphisms among the population. This study resulted in a low genetic similarity among the Sipahutar pineapple population. The genetic diversity of Sipahutar pineapple plants propagated by in vitro culture had a similarity level of 75%-94%, showing somaclonal variations in vitro culture. The genetic similarity of pineapple accessions was divided into two main clusters, namely cluster A consisted of 11 accessions and cluster B consisted of 4 accessions. Cluster separation does not correlate to the source of plant materials studied.

Copyrights © 2022






Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...