Biodiversitas Journal of Biological Diversity
Vol. 23 No. 9 (2022)

Investigation of the genetic diversity of jewel orchid in Vietnam using RAPD and ISSR markers

THI KIM PHUONG TRAN (Facutly of Biology and Environment, Ho Chi Minh City University of Food Industry. 140 Le Trong Tan Street, Ho Chi Minh City 72009, Vietnam)
MINH HAC PHAM (Facutly of Biology and Environment, Ho Chi Minh City University of Food Industry. 140 Le Trong Tan Street, Ho Chi Minh City 72009, Vietnam)
THI HUONG TRINH (Facutly of Biology and Environment, Ho Chi Minh City University of Food Industry. 140 Le Trong Tan Street, Ho Chi Minh City 72009, Vietnam)
SASANTI WIDIARSIH (Research Center for Radiation Process Technology, Research Organization of Nuclear Energy, National Research and Innovation Agency. Jl. Lebakbulus Raya No. 49, South Jakarta 12440, Jakarta, Indonesia)
VIET THE HO (Facutly of Biology and Environment, Ho Chi Minh City University of Food Industry. 140 Le Trong Tan Street, Ho Chi Minh City 72009, Vietnam)



Article Info

Publish Date
20 Sep 2022

Abstract

Abstract. Tran TKP, Pham MH, Trinh TH, Widiarsih S, Ho VT. 2022. Investigation of the genetic diversity of jewel orchid in Vietnam using RAPD and ISSR markers. Biodiversitas 23: 4816-4825. Jewel orchid is a general name for several genera belonging to the Orchidaceae family, namely Anoectochilus, Doddinia, Goodyera, Ludisia, and Macodes. These plants are generally used as medicinal herbal for common diseases in Vietnam. Due to over-exploitation, the natural resources of jewel orchids are gradually depleted. Therefore, genetic resource research for proper development of this medicinal plant is necessary. This study aimed to investigate the genetic diversity of jewel orchids in Vietnam using RAPD and ISSR markers to provide basic data conservation of genetic resources and the development of this medicinal plant. A total of 20 jewel orchid samples were genetically characterized by using 10 RAPD and 10 ISSR primers. The amplified bands were binary coded and used to construct phylogenetic trees with NTSYSpc 2.1 software. Each RAPD primer produced 5-11 bands with an average of 8.0, and similarity coefficients ranged from 0.52 to 0.81. Each ISSR primer produced 5-10 bands with an average of 7.6, and the similarity coefficients ranged from 0.54 to 0.87. Combined RAPD and ISSR markers produced similarity coefficients ranging from 0.53 to 0.83. Based on the PIC values, the primers used by both markers are highly informative. However, the topology of cluster analysis of 20 jewel orchid accessions does not correspond to the taxa studied. The findings could be potential to employ in future classification, conservation, and development of this plant.

Copyrights © 2022






Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...