Biodiversitas Journal of Biological Diversity
Vol. 23 No. 12 (2022)

Polymorphism analysis of drought tolerance gene OsDREB2A in Indonesian local rice from Lampung, Indonesia

LILI CHRISNAWATI (Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Lampung. Jl. Prof. Dr. Ir. Sumantri Brojonegoro No. 1, Bandar Lampung 35141, Lampung, Indonesia)
ETI ERNAWIATI (Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Lampung. Jl. Prof. Dr. Ir. Sumantri Brojonegoro No. 1, Bandar Lampung 35141, Lampung, Indonesia)
YULIANTY YULIANTY (Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Lampung. Jl. Prof. Dr. Ir. Sumantri Brojonegoro No. 1, Bandar Lampung 35141, Lampung, Indonesia)
MUHAMMAD RIFQI HARIRI (Research Center for Biosystematics and Evolution, Research and Innovation Agency. Jl. Raya Jakarta-Bogor Km. 46, Cibinong, Bogor 16911, West Java, Indonesia)



Article Info

Publish Date
19 Dec 2022

Abstract

Abstract. Chrisnawati L, Ernawiati E, Yulianty, Hariri MR. 2022. Polymorphism analysis of drought tolerance gene OsDREB2A in Indonesian local rice from Lampung, Indonesia. Biodiversitas 23: 6352-6357. Drought stress is a significant threat to rice cultivation and the selection of drought-tolerant rice plants is needed to find superior plants. The OsDREB2A gene plays a role in the regulation of drought tolerance and is widely used as a marker. Therefore, this study aims to analyze the OsDREB2A gene polymorphism in the local rice variety of Lampung Lumbung Sewu Cantik, compared to the Inpago 8 drought-tolerant and the IR64 sensitive variety. DNA extraction was performed on fresh leaves using the GENEAID Genomic DNA Mini Kit, amplification by PCR was carried out with the OsDREB2A primer pair, while sequence analysis was conducted with MEGA X and confirmed using the BLAST program. The sequencing results showed that the three rice varieties had the same sequence length of 250 bp. The Lumbung Sewu Cantik variety has the same sequence as Inpago 8, while IR64 has an insertion that causes a frameshift mutation. Furthermore, phylogenetic analysis showed that the Lumbung Sewu Cantik variety was in a similar group with tolerant varieties, while IR64 was in a different group. The similarity of the OsDREB2A Lumbung Sewu Cantik sequence is presumably associated with tolerance to drought.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...