Biodiversitas Journal of Biological Diversity
Vol. 24 No. 7 (2023)

eDNA assessment of scleractinian diversity and distribution in Lemukutan Island, Indonesia

IWAN KUNCORO (Department of Marine Science and Technology, Faculty of Fisheries and Marine Sciences, Institut Pertanian Bogor. Jl. Raya Dramaga, IPB Dramaga, Bogor 16680, West Java, Indonesia)
NEVIATY PUTRI ZAMANI (Department of Marine Science and Technology, Faculty of Fisheries and Marine Sciences, Institut Pertanian Bogor. Jl. Raya Dramaga, IPB Dramaga, Bogor 16680, West Java, Indonesia)
BEGINER SUBHAN (Department of Marine Science and Technology, Faculty of Fisheries and Marine Sciences, Institut Pertanian Bogor. Jl. Raya Dramaga, IPB Dramaga, Bogor 16680, West Java, Indonesia)
NI KADEK DITA CAHYANI (Department of Biology, Faculty of Science and Mathematics, Universitas Diponegoro. Jl. Prof. Soedarto, SH Tembalang, Semarang 50275, Central Java, Indonesia)



Article Info

Publish Date
07 Aug 2023

Abstract

Abstract. Kuncoro I, Zamani NP, Subhan B, Cahyani NKD. 2023. eDNA assessment of scleractinian diversity and distribution in Lemukutan Island, Indonesia. Biodiversitas 24: 4185-4191. Coral reefs are one of the most degraded and endangered tropical marine ecosystems. The study of biodiversity and its distribution is significant for biomonitoring. Lemukutan is an island that has a coral reef ecosystem with high biodiversity. This study aims to examine the biodiversity of coral species on Lemukutan Island using the Environmental DNA (eDNA) approach to survey scleractinian diversity across Lemukutan Island. Surface seawater samples were taken from five sites. eDNA sample extracted from the filter paper used for filtration Polymerase Chain Reaction (PCR) amplification was performed with Internal Transcribed Spacer (ITS2) primers, and Next Generation Sequencing was used to examine the results. The result found 2,413 Amplicon Sequence Variance (ASVs) and 275,000 reads from seawater samples from 5 sites. 87 ASVs from the eukaryotic group (146,378 reads) and 1,926 ASVs from unidentified taxa (128,622 reads) were identified. The highest phylum of eukaryotic taxa obtained was Phylum Cnidaria, with 332 ASVs (72% of the total eukaryotic ASVs) and 77,428 reads (85% of the total eukaryotic reads). There are 43 species of eukaryotes, including the Cnidaria group-based eDNA. The results show 14 species of scleractinian and different species compositions from each sampling location. In conclusion, the eDNA method has sensitive results in detecting 14 scleractinian species composition without destroying habitats and organisms. Knowledge regarding species diversity and distribution of taxa with eDNA assessment can be used as a reference in monitoring coral reef ecosystems on Lemukutan Island, Indonesia.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...