Biodiversitas Journal of Biological Diversity
Vol. 24 No. 11 (2023)

Characterization of 16S rRNA of the gut microbiome in long-tailed macaque (Macaca fascicularis) with spontaneous type 2 diabetes mellitus

PRAMESTY WULAN RAMADHANTY (Program of Primatology, Graduate School, Institut Pertanian Bogor. Jl. Lodaya II No. 5, Bogor 16151, West Java, Indonesia)
UUS SAEPULOH (Primate Research Center, LPPM IPB, Institut Pertanian Bogor. Jl. Lodaya II No. 5, Bogor 16151, West Java, Indonesia)
IRMA HERAWATI SUPARTO (Department of Chemistry, Faculty of Mathematics and Natural Science, Institut Pertanian Bogor. Jl. Tanjung Kampus IPB Dramaga, Bogor 16680, West Java, Indonesia)
HUDA SHALAHUDIN DARUSMAN (Department of Anatomy, Physiology, and Pharmacology, Faculty of Veterinary, Institut Pertanian Bogor. Jl. Agatis Kampus IPB Dramaga, Bogor 16680, West Java, Indonesia)



Article Info

Publish Date
06 Dec 2023

Abstract

Abstract. Ramadhanty PW, Saepuloh U, Suparto IH, Darusman HS. 2023. Characterization of 16S rRNA of the gut microbiome in long-tailed macaque (Macaca fascicularis) with spontaneous type 2 diabetes mellitus. Biodiversitas 24: 6191-6199. The gut microbiota in the body is very complex and varied. It is known to influence human health. Imbalance (dysbiosis) of the gut microbiota can lead to type 2 diabetes mellitus (T2DM) and become a new feature in the development of the disease. Several human studies have compared the bacterial community in T2DM and non-T2DM patients. Until now, research on gut microbiota associated with T2DM in non-human primate animal models is still rare. T2DM can be developed by long-tailed macaque with clinical features similar to humans, which provides important information about the relationship between gut microbiota and T2DM. This study aims to characterize full-length 16S rRNA genes to obtain gut microbiota profiles in long-tailed macaques with and without spontaneous T2DM. The characterization was carried out using a metagenomic approach targeted at the full-length 16S rRNA gene with Nanopore technology (GridION) as one of the third-generation sequencing. The sample used was rectal swabs from adult male long-tailed macaques in the spontaneous T2DM group (n=3) and non-T2DM group (n=3). An increase in the alpha diversity, Firmicutes phylum, Oscillibacter genus, Oscillibacter valericigenes, and Oscillibacter ruminantium species, as well as a decrease in the Proteobacteria phylum were found in the T2DM group. The Firmicutes/Bacteroidetes ratio was also increased in the T2DM group compared to the non-T2DM group, which indicates dysbiosis. Based on these results, the metagenomic marker of the gut microbiome T2DM was obtained in long-tailed macaque primates, similar to humans with T2DM.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...