Biodiversitas Journal of Biological Diversity
Vol. 24 No. 7 (2023)

DGAT1 gene polymorphism and their association with fat deposition and carcass quality in Pasundan cattle of Indonesia

DUDI DUDI (Animal Production, Faculty of Animal Husbandry, Universitas Padjadjaran. Jl. Raya Bandung-Sumedang Km. 21, Jatinangor-Sumedang 45363, West Java, Indonesia)
NENA HILMIA (Animal Production, Faculty of Animal Husbandry, Universitas Padjadjaran. Jl. Raya Bandung-Sumedang Km. 21, Jatinangor-Sumedang 45363, West Java, Indonesia)
ISYANA KHAERUNNISA (Research Center for Biotechnology-Indonesian Institute of Sciences. Jl. Raya Bogor Km. 46, Cibinong, Bogor 16911, West Java, Indonesia)
ANDI MUSHAWWIR (Animal Production, Faculty of Animal Husbandry, Universitas Padjadjaran. Jl. Raya Bandung-Sumedang Km. 21, Jatinangor-Sumedang 45363, West Java, Indonesia)



Article Info

Publish Date
06 Aug 2023

Abstract

Abstract. Dudi D, Hilmia N, Khaerunnisa I, Mushawwir A. 2023. DGAT1 gene polymorphism and their association with fat deposition and carcass quality in Pasundan cattle of Indonesia. Biodiversitas 24: 4202-4208. The bovineAcyl-CoA: Diacylglycerol O-acyltransferase 1 (DGAT1) gene is crucial to milk and meat quality in cattle. The K232A DGAT1 mutation was broadly used as a milk and meat quality genetic marker. Pasundan cattle are Indonesian local cattle from West Java. These local cattle have adapted to the tropical environment, environmental factors are not obstructing their development. The DGAT1 gene polymorphism information and their contribution to fat deposition and carcass quality in Pasundan cattle is very limited. The objective of this study was to examine the genetic polymorphism of the K232A DGAT1 gene and its association with fat deposition and carcass quality in Pasundan cattle population. The gene polymorphisms were identified using PCR, and direct sequencing to discover a single nucleotide polymorphism (SNP). All sequencing results (ABI trace files) were analyzed in FinchTV, BioEdit, and Molecular Evolutionary Genetic Analysis (MEGA) 6.0. Genotyping was performed on 80 Pasundan cattle. In comparison, Ongole-Grade (n=5), Bali (n=2), Simmental (n=2), Limousin (n=2), Madura (n=2), and Pesisir (n=2) were also used in this study. Their association with fat deposition and carcass quality was evaluated on seven heads of AK genotype and 23 heads of KK genotype. According to the sequencing result, two SNPs were found at g.201G>A and g.202C>A, respectively. The K232A DGAT1 locus was polymorphic in Pasundan cattle population with the K and A allele frequencies of 0.956 and 0.044, respectively. In addition, DGAT1 gene polymorphisms are not associated with back fat thickness, longissimus dorsi area, rump area, and intramuscular fat.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...