Biodiversitas Journal of Biological Diversity
Vol. 25 No. 3 (2024)

Genotypic identification and catechin profiling of Uncaria gambir in West Sumatra, Indonesia

EPI SUPRI WARDI (Doctoral Program, Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Andalas. Jl. Raya Unand, Limau Manis, Padang 25175, West Sumatra, Indonesia)
SUMARYATI SYUKUR (Department of Chemistry, Faculty of Mathematics and Natural Science, Universitas Andalas. Jl. Raya Unand, Limau Manis, Padang 25175, West Sumatra, Indonesia)
ZULKARNAIN CHAIDIR (Department of Chemistry, Faculty of Mathematics and Natural Science, Universitas Andalas. Jl. Raya Unand, Limau Manis, Padang 25175, West Sumatra, Indonesia)
JAMSARI JAMSARI (Magister Program of Biotechnology, School of Postgraduate, Universitas Andalas. Limau Manis, Padang 25163, West Sumatra, Indonesia)



Article Info

Publish Date
01 Apr 2024

Abstract

Abstract. Wardi ES, Syukur S, Chaidir Z, Jamsari J. 2024. Genotypic identification and catechin profiling of Uncaria gambir in West Sumatra, Indonesia. Biodiversitas 25: 1151-1158. The primary objective of this study is to assess genetic and chemical variability among four genotypes of Uncaria gambir cultivated in West Sumatra. Uncaria gambir is native to Indonesia, widely cultivated in West Sumatra, used as an herbal remedy, and become a significant agricultural product for Indonesian export with catechin content as a standard. The phytochemical components of this species have been extensively studied, and its extracts are employed in traditional medicine. To fingerprint genomic DNA, we employed three pairs of Specific Sequence-Related Amplified Polymorphism (SRAP) markers selected from 29 combinations tested. A total of 150 amplified bands were generated, highlighting substantial genetic variability among the tested genotypes. Notably, the highest amplified and polymorphic band was obtained with primer E combination from three selected primers (primer E, primer F, and primer T). In addition, only catechins were identified among the four types of catechins employed as HPLC standards. We detected varying catechin concentrations among the genotypes, with genotype Mancik exhibiting the highest concentration. This finding underscores the potential for genotype-specific bioactive marker identification within U. gambir. In addition, this study shows the efficiency of SRAP markers in genotype identification within U. gambir. Furthermore, the identification of catechin as a prominent bioactive marker emphasizes its significance for further exploration and conservation efforts.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...