Biodiversitas Journal of Biological Diversity
Vol. 26 No. 3 (2025)

DNA barcode of native apple snail Pila virescens (Deshayes, 1824) (Gastropoda: Ampullariidae) from Madura Island, Indonesia

RENI AMBARWATI (Program of Biology, Faculty of Mathematics and Natural Sciences, Universitas Negeri Surabaya. Jl. Ketintang, Surabaya 60231, East Java, Indonesia)
DWI ANGGOROWATI RAHAYU (Program of Biology, Faculty of Mathematics and Natural Sciences, Universitas Negeri Surabaya. Jl. Ketintang, Surabaya 60231, East Java, Indonesia)
ULFI FAIZAH (Program of Biology Education, Faculty of Mathematics and Natural Sciences, Universitas Negeri Surabaya. Jl. Ketintang, Surabaya 60231, East Java, Indonesia)
NUR ROHMATIN ISNANINGSIH (Research Center for Biosystematics and Evolution, National Research and Innovation Agency. Jl. Raya Jakarta-Bogor Km 46, Cibinong 16911, West Java, Indonesia)



Article Info

Publish Date
10 Mar 2025

Abstract

Abstract. Ambarwati R, Rahayu DA, Faizah U, Isnaningsih NR. 2025. DNA barcode of native apple snail Pila virescens (Deshayes, 1824) (Gastropoda: Ampullariidae) from Madura Island, Indonesia. Biodiversitas 26: 1145-1155. Pila virescens is a native apple snail species in Indonesia that is currently under severe threats that urgently require our attention. This research is therefore crucial in validating P. virescens from Madura Island, using both morphological and molecular data, specifically DNA Barcode Cytochrome Oxidase Subunit 1 (COI). Samples were collected from Tlambah Reservoir, Sampang, Madura. Morphological identification was conducted based on shell characteristics, while molecular characterization was applied based on DNA barcode COI. The 618-base pair (bp) of CO1 gene sequence was used for the analysis of genetic diversity and the reconstruction of a phylogenetic tree. Muscle samples were preserved in pure-grade ethanol and underwent a series of procedures, including DNA extraction, Polymerase Chain Reaction (PCR), and sequencing, all conducted with the utmost care and precision. Sequence data were analyzed using Barcode of Life Data Systems (BOLD) Systems, the Automatic Barcode Gap Discovery (ABGD) web application, and haplotype network analysis. The results showed a high Haplotype diversity (Hd) of 0.09091 and a nucleotide diversity (?) of 0.17676, representing a substantial range of genetic variation. The frequency of parsimony informative sites was recorded at 26.48%, with 18 polymorphic sites identified, leading to a total transition/transversion (ts/tv) ratio of 2.4. Furthermore, the phylogenetic trees had a clear and distinct branching pattern for the cluster P. virescens with another ingroup. These results would significantly enhance the understanding of genetic diversity within the Pila genus, which is crucial for effective conservation efforts.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...