Biodiversitas Journal of Biological Diversity
Vol. 26 No. 12 (2025)

Functional profiling of Syzygium aromaticum-associated bacteria reveals PGPR traits for tropical biofertilizer development

HENRY KESAULYA (Department of Plant Breeding, Faculty of Agriculture, Universitas Pattimura. Jl. Ir. M. Putuhena, Ambon 97233, Maluku, Indonesia)
WAHYU HIDAYAT (Department of Agrotechnology, Faculty of Agriculture, Universitas Pattimura. Jl. Ir. M. Putuhena, Ambon 97233, Maluku, Indonesia)
RUMELLA SIMARMATA (Research Centre for Applied Microbiology, National Research and Innovation Agency. Jl. Raya Jakarta-Bogor Km 46, Cibinong, Bogor 16911, West Java, Indonesia)
JOGENEIS PATTY (Department of Agrotechnology, Faculty of Agriculture, Universitas Pattimura. Jl. Ir. M. Putuhena, Ambon 97233, Maluku, Indonesia)



Article Info

Publish Date
01 Jan 2025

Abstract

Abstract. Kesaulya H, Hidayat W, Simarmata R, Patty J. 2025. Functional profiling of Syzygium aromaticum-associated bacteria reveals PGPR traits for tropical biofertilizer development. Biodiversitas 26: 6130-6139. Syzygium aromaticum (clove) is a tropical spice of major economic and ecological importance in Indonesia, yet the microbial communities associated with its cultivation remain poorly characterized. Harnessing native Plant Growth-Promoting Rhizobacteria (PGPR) offers a sustainable alternative to chemical inputs and supports resilient agroecosystems. This study explored the biofertilizer potential of bacterial strains isolated from S. aromaticum-growing regions in Central Maluku, Indonesia. Rhizospheric and endophytic isolates were characterized using physiological assays and 16S rRNA sequencing to assess key PGPR traits, including auxin production, phosphate solubilization, nitrogen fixation, and enzymatic activities relevant to nutrient cycling and stress tolerance. Eleven isolates were obtained, with greater diversity from the rhizosphere (9 isolates) than from leaves (2 isolates). Screening demonstrated multiple plant-beneficial traits, including indole-3-acetic acid production, phosphate solubilization, and growth in nitrogen-free medium, complemented by hydrolytic enzyme activities and catalase-based stress tolerance. Three isolates showed particularly strong multifunctional profiles: T5RCHM21 (high IAA, phosphate solubilization, nitrogen-fixation trait, broad pH tolerance), T6RCHM3 (highest phosphate solubilization and cellulolytic activity), and T4RCHM3 (very strong catalase with additional enzymatic indices). 16S rRNA analysis grouped isolates mainly within Bacillus, with Brevibacterium, and  Klebsiella, supporting phenotype-driven selection and future field validation for practical application.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...