Indonesian Journal of Chemical Science
Vol. 15 No. 2 (2026): Indonesian Journal of Chemical Science

Molecular Docking Study of Xanthone Targeting the Dihydropteroate Synthase (2VEG) Enzyme in Streptococcus pneumoniae

Dia Lestari (Universitas Mataram)
Resti Aulia Lestari (Universitas Mataram)
Alien Putri Hartiwi (Universitas Mataram)
Emmy Yuanita (Universitas Mataram)
Diah Miftahul Aini (Universitas Mataram)



Article Info

Publish Date
03 Aug 2026

Abstract

Streptococcus pneumoniae is a pathogenic bacterium causing serious infections, with rising antibiotic resistance highlighting the need for new agents. Dihydropteroate synthase (DHPS) is crucial in bacterial folate biosynthesis and a selective drug target. This study evaluated xanthone derivatives as DHPS inhibitors via molecular docking. Three derivatives namely 1,3,7-trihydroxy-9H-xanthen-9-one (Candidate 1), 1-hydroxy-9-oxo-7-sulfo-9H-xanthene-3-carboxylic acid (Candidate 2), and 9-oxo-1,7-disulfo-9H-xanthene-3-carboxylic acid (Candidate 3), were docked against DHPS (PDB ID: 2VEG) using UCSF Chimera, AutoDock Tools, and AutoDock Vina. Interaction analyses were performed with Discovery Studio and LigPlot+. All candidates bound stably in the DHPS active site; Candidate 2 exhibited the strongest binding (−7.7 kcal/mol) with key hydrogen bonds, while Candidate 3 showed extensive hydrophobic and electrostatic interactions. These results indicate xanthone derivatives, especially Candidate 2, as promising DHPS inhibitors for novel antibacterial development.

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Journal Info

Abbrev

ijcs

Publisher

Subject

Chemistry Physics

Description

Indonesian Journal of Chemical Science publishes basic research articles and conceptual of Chemistry, issued three (3) times a year, overall 10 articles per issued. To commemorate important events and agenda, may be issued a special edition that will include 10 articles in each ...