Jurnal Harpodon Borneo
VOLUME 18 NOMOR 2, OKTOBER 2025

IDENTIFICATION STUDY OF SAND CUCUMBER (Holothuria scabra) USING DNA BARCODING IN BUAYA ISLAND ALOR AND SERAYA ISLAND LABUAN BAJO

Gyan Carlo Valentino Yusuf (University of Nusa Cendana)
Marcelien Dj. Ratoe Oedjoe (University Of Nusa Cendana)
Nicodemus Dahoklory (University Of Nusa Cendana)



Article Info

Publish Date
28 Jan 2026

Abstract

Holothuria scabra, commonly known as sandfish, is a highly valued sea cucumber species distributed in tropical marine waters, including Indonesia. This study aimed to genetically identify H. scabra populations from Buaya Island (Alor) and Seraya Island (Labuan Bajo) using DNA barcoding of the Cytochrome Oxidase I (COI) gene. The methods included DNA extraction, COI gene amplification via PCR, electrophoresis, sequencing, and phylogenetic analysis. Results showed that all four samples from both locations had 683 bp sequences and 99.12% similarity to the reference H. scabra sequence (NC_027086.1). Phylogenetic analysis grouped all samples into a single clade with a bootstrap value of 100, indicating they belong to the same species. These findings suggest that the H. scabra populations in both locations are genetically monomorphic. This study provides essential scientific data to support sustainable aquaculture and conservation strategies for sandfish in Indonesia

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Journal Info

Abbrev

harpodon

Publisher

Subject

Description

Jurnal Harpodon Borneo is a national scientific journal dedicated to advancing knowledge and innovation in the fields of Fisheries and Marine Science. The scope of the journal includes, but is not limited to, the following research areas: Ecology, Biodiversity, and Conservation of Aquatic Resources ...