Jurnal Medik Veteriner
Vol. 9 No. 2 (2026): October

Phenotype and genotype detection of Escherichia coli and Salmonella spp. contamination in fishery commodities in Bali, Indonesia

Aris Jatmiko (Study Program of Biology, Faculty of Health and Science, Universitas Dhyana Pura, Badung, Bali, Indonesia)
Ni Kadek Dwipayani Lestari (Study Program of Biology, Faculty of Health and Science, Universitas Dhyana Pura, Badung, Bali, Indonesia)
Anak Agung Ayu Putri Permatasari (Study Program of Biology, Faculty of Health and Science, Universitas Dhyana Pura, Badung, Bali, Indonesia)
Putu Eka Sudaryatma (Marine and Fisheries Quality Assurance Agency, Ministry of Marine Affairs and Fisheries (KKP), Republic of Indonesia, Indonesia)
Pascal Sebastian (Indo Ocean Research and Education Center, Desa Toyapakeh, Nusa Penida, Klungkung, Bali, Indonesia)
Muhammad Khaliim Jati Kusala (Research Centre for Veterinary Science, Research Organization for Health, National Research and Innovation Agency (BRIN), Bogor, West Java, Indonesia)
Putu Angga Wiradana (Study Program of Biology, Faculty of Health and Science, Universitas Dhyana Pura, Badung, Bali, Indonesia)



Article Info

Publish Date
01 Oct 2026

Abstract

This study aimed to identify Salmonella spp. and Escherichia coli contamination associated with foodborne diseases in fishery commodities from Bali, Indonesia. A total of 216 samples representing commercially important fish and shrimp species were collected from suppliers, fish processing units, micro, small, and medium enterprises (MSMEs), traditional markets, and modern markets across regencies in Bali. Sampling was proportionally distributed across supply chain loci, with three replicate samples collected for each commodity at each locus to minimize sampling bias and improve prevalence estimates. Phenotypic detection was performed using selective culture media, while positive isolates were confirmed genotypically using specific primers targeting the invA gene for Salmonella spp. and the lacZ gene for E. coli. The results revealed the presence of E. coli contamination in all fishery commodities examined, albeit with varying prevalence across commodity types. Conversely, Salmonella spp. was not detected in any of the samples. The highest prevalence of E. coli contamination by sampling locus was observed in traditional markets (12/36; 33%), whereas lemuru fish exhibited the highest prevalence among commodity types (5/10; 50%). Spatially, Tabanan Regency showed the highest prevalence of E. coli contamination, reaching up to 66% across the surveyed villages. Genotypic confirmation successfully identified E. coli isolates based on amplification of the lacZ gene at 876 bp. These findings highlight the need to implement a One Health approach as an effective framework for controlling foodborne bacterial contamination and its environmental transmission.

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Journal Info

Abbrev

JMV

Publisher

Subject

Biochemistry, Genetics & Molecular Biology Veterinary

Description

urnal Medik Veteriner (JMV) publishes high quality and novelty papers focusing on Veterinary and Animal Science. The fields of study are anatomy, pathology, basic medicine, veterinary public health, microbiology, veterinary reproduction, parasitology, animal husbandry and animal welfare. Food ...