Indonesian Journal of Biotechnology
Vol 31, No 3 (2026)

Chemical composition, antifungal, antioxidant, anti-biofilm, anticancer, molecular docking and molecular dynamic simulation evaluation of Zanthoxylum avicennae (Lam.) DC. fruit essential oil

Ngau, Tran Hoang (Unknown)
Nguyen, Dung Tien (Unknown)
Phan, Nam Hoang (Unknown)
Vo, Hao Thien (Unknown)
Tran, An I (Unknown)
Tran, Nghi Phuong Ngoc (Unknown)
La, Phat Gia (Unknown)
Trinh, Trung Thanh Tran (Unknown)
Hoang, Viet (Unknown)



Article Info

Publish Date
30 Sep 2026

Abstract

Zanthoxylum avicennae (Lam.) DC. is an aromatic, prickly Rutaceae shrub or small tree whose oil-gland-bearing fruits have a characteristic pepper-like aroma and a history of traditional medicinal use in Southeast Asia. Because the chemical profile and integrated bioactivity of fruit essential oil (EO) from central Vietnam remain insufficiently characterized, this study examined the chemical composition and in vitro bioactivities of the fruit EO collected in Quang Nam, Vietnam. A total of 24 volatile components were identified via GC-MS, with the major components being estragole, eucalyptol, β-linalool, and caryophyllene oxide. Furthermore, the oil exhibited antimicrobial efficacy against B. cereus, S. aureus, A. niger, A. brassicicola and P. capsici, with particular antifungal activity against P. capsici (MIC = 62.5 µg/mL). The oil suppressed S. aureus biofilm formation in a dose-dependent manner (IC50 = 473.2 µg/mL). Cytotoxicity was weak against A549 cells and negligible within the tested range against B16-F10 and Huh-7 cells. Molecular docking identified (+)-(S)-terpinen-4-ol as the best-scoring ligand for CYP51 and Hsp90. A 100-ns molecular dynamics simulation indicated that the CYP51-(+)-(S)-terpinen-4-ol complex remained structurally stable, with persistent but conformationally flexible contacts. MM/GBSA analysis yielded a favorable mean binding energy of −33.63 ± 4.92 kcal/mol, dominated by van der Waals interactions. Overall, Z. avicennae fruit EO showed promising in vitro antifungal, antioxidant, and anti-biofilm activities that warrant further constituent-specific, mechanistic, toxicity, and in vivo validation.

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Journal Info

Abbrev

ijbiotech

Publisher

Subject

Biochemistry, Genetics & Molecular Biology Immunology & microbiology Materials Science & Nanotechnology

Description

The Indonesian Journal of Biotechnology (IJBiotech) is an open access, peer-reviewed, multidisciplinary journal dedicated to the publication of novel research in all aspects of biotechnology, with particular attention paid to the exploration and development of natural products derived from ...