Biota
Vol 12 No 2 (2026): Jurnal Biota

Cloning of the pcbC Gene Encoding Isopenicillin N Synthase Family Oxygenase from Serratia plymuthica UBCF_13 in Escherichia coli

Fauzan Syarif Nursyafi (Department of Biomedical Engineering, Kumoh National Institute of Technology, Gumi, North Gyeongsang, Republic of Korea)
Abi Awfa Rahman (Department of Biomedical Sciences, Medical Faculty, Universitas Andalas, Padang, Indonesia)
Imron Hasibuan (Department of Biomedical Sciences, Medical Faculty, Universitas Andalas, Padang, Indonesia)
Lisana Shiddiqin Aliyya (Department of Biomedical Sciences, Medical Faculty, Universitas Andalas, Padang, Indonesia)
Noza Hilbertina (Department of Biomedical Sciences, Medical Faculty, Universitas Andalas, Padang, Indonesia)
Dian Pertiwi (Department of Biomedical Sciences, Medical Faculty, Universitas Andalas, Padang, Indonesia)
Hasmiwati Hasmiwati (Department of Biomedical Sciences, Medical Faculty, Universitas Andalas, Padang, Indonesia)
Julizar Nazar (Department of Biomedical Sciences, Medical Faculty, Universitas Andalas, Padang, Indonesia)
Lily Syukriani (Department of Agronomy Faculty of Agriculture, Universitas Andalas, Padang, Indonesia)
Jamsari Jamsari (Master Program of Biotechnology, School of Post Graduate, Universitas Andalas, Padang, Indonesia)



Article Info

Publish Date
25 Aug 2026

Abstract

Developing semisynthetic penicillin is one approach to overcoming antibiotic resistance. Isopenicillin N synthase (IPNS) is crucial for the biosynthesis of semisynthetic penicillin, as it catalyzes the oxidative condensation of delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine (LLD-ACV) to isopenicillin N. Through genome mining studies of Serratia plymuthica strain UBCF_13, the presence of the pcbC gene encoding isopenicillin N synthase family oxygenase (IPNSfo) was revealed. Therefore, this study aimed to clone the pcbC gene from S. plymuthica UBCF_13 into Escherichia coli and to characterize it at the DNA and in silico level. To achieve this, the pcbC gene was first amplified using PCR with specific primers, producing a single amplicon of approximately 1035 bp, and then cloned into the pGEM-T Easy vector. Colony PCR verified the presence of the recombinant pGEM_pcbC construct in transformant bacteria. The cloned insert was subsequently sequenced, and the edited consensus sequence showed 100% similarity and 0% phylogenetic distance to the S. plymuthica UBCF_13 genome. For bioinformatics characterization, the predicted IPNSfo protein structure showed consistent features, and domain analysis identified three conserved domains: DIOX_N, IPNS-like_FE2OG_OXY, and Oxoglu/Fe_dep_dioxygenase. These findings demonstrate the successful cloning and preliminary molecular characterization of the pcbC gene from S. plymuthica UBCF_13 in E. coli.

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Journal Info

Abbrev

biota

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Environmental Science Materials Science & Nanotechnology Medicine & Pharmacology

Description

Jurnal biota is an open access, peer-reviewed, multidisciplinary journal dedicated to the publication of novel research in all aspects of biology, with particular attention paid to the exploration and biodiversity Wetland tropical—and especially Indonesian—biodiversity. Original research ...