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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 59 Documents
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Search results for , issue "vol. 18 no. 2 (2017)" : 59 Documents clear
The use of forest canopy by various bird species in tropical forest montana zone, the Nature Reserve of Mount Tilu, West Java, Indonesia RUHYAT PARTASASMITA; ZAMZAM I’LANUL ANWAR ATSAURY; TEGUH HUSODO
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180202

Abstract

Abstract. Partasasmita R, Atsuary ZIA, Husodo T. 2017. The use of forest canopy by various bird species in tropical forest montana zone, the Nature Reserve of Mount Tilu, West Java, Indonesia. Biodiversitas 18: 453-457. Availability of vertically or horizontally space on a habitat is needed by birds for their activities. Forest is the habitat that provides vertical space strata more numerous and tend to be inhabited by various species of birds more diverse. Strata of trees canopy provide the resources needed by various species of birds, therefore allowing each canopy strata is utilized by certain bird species. This research aimed to study the use of strata of trees canopy by various species of birds in a tropical forest montana zone, Mount Tilu Nature Reserve, West Java, Indonesia. Opportunistic spot-observation of individual was used to study the activity and the use of space by birds. The results showed that the use of layers of the forest canopy by birds that Emergent: 4 species, Canopy: 29 species, Sub-canopy: 16 species, understorey: 25 species and Ground: 11 species. The use of space position on plants by birds was space on canopy by 8 species, space at the edge of canopy by 33 species, space in canopy by 34 species, space under canopy by 19 species and on the ground by 11 species, with 7 species capable to use 3 space positions on plants. The highest similarity index of canopy layers uses was between canopy and sub canopy layers, with percentage 57.63%. The highest similarity index of position uses was between position of space at the edge of canopy and space in canopy with percentage 53.73%.Keywords: Bird, forest canopy layer, Mount Tilu Nature Reserve, space utilization
Seasonal variations in abundance and diversity of copepods in Mond River estuary, Bushehr, Persian Gulf ALIAKBAR HEDAYATI; MOJTABA POULADI; AMIR VAZIRIZADEH; AMIR QADERMARZI; NEDA MEHDIPOUR
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180201

Abstract

Abstract. Hedayati A, Pouladi M, Vazirizadeh A, QadermarziA, Mehdipour N. 2017. Seasonal variations in abundance and diversity of copepods in Mond River estuary, Bushehr, Persian Gulf. Biodiversitas 18: 447-452. The present study was carried out to investigate the abundance and biodiversity of copepods from Mond River (MR) estuary, Bushehr, Persian Gulf during 4 seasons and their relationships with environmental factors. The water samples were collected in mid-season from spring 2012 to winter 2013 for one year period. Copepod samples were collected by using of 140 µm plankton net with 25 cm mouth diameter and vertical towing in all stations. Copepod assemblages were comprised of 4 orders, 13 families and 10 genera. Orders were included; Calanoida, Cyclopoida, Poecilostomatoida, Harpacticoida and Genera were included: Cathocalanus, Acrocalanus, Paracalanus, Subeucalanus, Centropages, Temora, Calanopia, Labidocera, Pontella, Acartia, Oithona, Oncaea, Corycaeus, Microsetella, Microsetella and Euterpina. The order Calanoida with 10 genera was the most diverse and dominant order between Identified orders. The means (±SE) of copepods abundance were recorded in spring (5853.4±1826.19 Individual m-3), in summer (6707.6±1930.15 Ind. m-3), in fall (4393.6±1263.37 Ind. m-3) and in winter (3400±763.98 Ind. m-3), respectively. Simpson and Shannon-Wiener biodiversity indices were obtained in spring (0.87±0.11 and 2.86±0.19), in summer (0.89±0.006 and 3.11±0.15), in fall (0.86±0.13 and 2.66±0.2) and in winter (0.83±0.12 and 2.39±0.15), respectively. The copepod assemblages had most amounts of diversity and abundance at station 5 in all seasons. Pearson correlation showed significant correlation between copepod diversity and abundance with salinity, pH and temperature. Results showed that salinity factor was more effective environmental factor on Simpson (0.01> P and r=0.783) and Shannon-Weiner indices (0.01> P and r=0.727), and copepods abundance (0.01> P and r=0.664) in MR estuary. Keywords: Abundance, copepod, diversity, environmental factor, Mond Estuary
The estimation of dynamical distribution of domesticated Burgo chicken population in Bengkulu coastal area, Indonesia HERI DWI PUTRANTO; GADING PUTRA HASIBUAN; YOSSIE YUMIATI; JOHAN SETIANTO; BIENG BRATA; NOVITRI KURNIATI; FITRIAN FAJAR HAKIKI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180203

Abstract

Abstract. Putranto HD, Hasibuan GP, Yumiati Y, Setianto J, Brata B, Kurniati N, Hakiki FF. 2017. The estimation of dynamical distribution of domesticated Burgo chicken population in Bengkulu coastal area, Indonesia. Biodiversitas 18: 458-464. As one of the endemic bird species, which inhabits on the west coast of Sumatra and southern Sumatra region, such as Bengkulu Province, Jambi Province and South Sumatra Province, Burgo chicken is recognized as a pet and a socio-economic symbol status for fanciers. The study aimed to monitor the dynamical distribution of male Burgo population domesticated by fanciers in three regencies and a city located along the coastal area of Bengkulu Province. The locations were determined by a purposive sampling method. By using the software in the form of online questionnaire program, enumerators conducted a field survey for 4 weeks in July-August 2016 by a purposive sampling in three regencies and a city, i.e. Bengkulu City, Seluma District, Bengkulu Utara District and Bengkulu Tengah District. The datas obtained in the field were connected and stored in the system provided on a page and could be accessed in a limited basis. Furthermore, the population datas were summarized and analyzed by using a Variance-Mean Ratio (VMR) formula to determine the distribution pattern of domesticated male Burgo chicken. The results showed that in the year of 2016 the highest population of male Burgo chicken (53.29% population) was found in Bengkulu Utara District as many as 89 individuals, while the lowest population (1.19% or 2 individuals) was found in Seluma District. Furthermore, it was also known that the distribution of domesticated male Burgo population in the coastal area of Bengkulu Province could be classified as negative binomial distribution or over-dispersed (VMR>1.0). The results of estimation of dynamical distribution pattern of male Burgo chicken population in year of 2016 in the coastal areas of Bengkulu Province was similar to the distribution pattern of mixed sex Burgo chicken population in Bengkulu Province in year of 2009 which was categorized as negative binomial distribution. Keywords: Burgo, coastal, distribution, dynamic, population
Development of SNAP markers based on nucleotide variability of WRKY genes in coconut and their validation using multiplex PCR ANNEKE PESIK; DARDA EFENDI; HENGKY NOVARIANTO; DINY DINARTI; SUDARSONO SUDARSONO
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180204

Abstract

Abstract. Pesik A, EfendiD, NovariantoH, DinartiD, Sudarsono S. 2017. Development of SNAP markers based on nucleotide variability of WRKY genes in coconut and their validation using multiplex PCR. Biodiversitas 18: 465-475. Development of molecular markers benefits coconut breeding program. The availability of DNA sequences for coconuts opens the new possibility of developing molecular markers such as single nucleotide amplified polymorphism (SNAP). The study aimed to evaluate nucleotide sequence diversities of WRKY gene in the GenBank database, design gene specific primers for generating WRKY gene specific SNAP markers, optimize multiplex PCR technique and validate SNAP marker effectiveness for evaluating Kopyor coconut germplasm. Based on 35 sequences data of coconut WRKY genes that are available in the GenBank database, we have identified eight informative SNPs and used them to generate SNP-specific primers. We have designed sixteen primer pairs and validated them using singleplex PCR. Subsequently, we optimized the Ta and primer concentrations either for duplex or triplex PCR. Duplex PCR using two sets of primer pairs was more reliable for genotyping Kopyor coconut germplasm than triplex PCR. We have successfully demonstrated the duplex PCR for genotyping Banten Tall, Jember Tall, Kalianda Tall, Pati Dwarf and Sumenep Tall Kopyor coconuts. Therefore, one may use the developed SNAP markers as a simple alternative of co-dominant markers for genetic analysis of coconuts. One may use the developed SNAP markers to investigate the possible association between markers and Kopyor endosperm and other relevant phenotypes in coconuts.Keywords: Kopyor coconut, multiplex PCR, SNP
The effect of various types of forest fires on pine resin productivity in Gunung Walat University Forest, Sukabumi, Indonesia CHRISTINE DELLA PRASETYA; LAILAN SYAUFINA; GUNAWAN SANTOSA
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180205

Abstract

Prasetya CD, Syaufina L, Santosa G. 2017. The effect of various types of forest fires on pine resin productivity in GunungWalat University Forest, Sukabumi, Indonesia. Biodiversitas 18: 476-482. Gunung Walat University Forest (GWUF) of Sukabumi,Indonesia is one of pine resin producers that has 71 hectares of resin production area. The forest fire burned 7 hectares of resinproduction area in August 2015 was expected to affect the resin productivity. The aim of this study was to analyze the effect of eachtype of forest fire to pine resin productivity and analyze the correlation between the biophysic aspect and pine resin productivity afterthe fire. The types of forest fire were litter and shrub fire, stem fire, and crown fire. ANOVA test showed that the types of forest firehave significant effect to resin production with the value of Ftable (3.12)<Ftest (4.88) and Pvalue (0.006)<α (0.05). The Tukey test showed that thestem fire and the crown fire gave the most significant result to the resin production with the mean of resin productivity value (g/tree/day)respectively 24.54 and 21.698.
Economic analysis of groundnut (Arachis hypogaea) and soybean (Glycine max) as intercropping plants in two agroforestry systems KARMINI KARMINI; SRI SARMINAH; KARYATI KARYATI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180206

Abstract

Karmini, Sarminah S, Karyati. 2017. Economic analysis of groundnut (Arachis hypogaea) and soybean (Glycine max) as intercropping plants in two agroforestry systems. Biodiversitas 18: 483-493. An agroforestry is a farming system combining forestry plant and agricultural plant. Two agroforestry systems of sengon (Falcataria moluccana)-groundnut (Arachis hypogaea) and jabon (Anthocephalus cadamba)-soybean (Glycine max) have been done and are proven to be successful. The objective of this study was to analyze the application of A. hypogaea and G. max as intercropping plants in two agroforestry systems from the aspect of economy. The study was conducted from January to June 2016 in Education Forest, Forestry Faculty, Universitas Mulawarman, Samarinda City, East Kalimantan Province, Indonesia. Data analysis was done to calculate the cost, revenue, and profit of the application of A. hypogaea and G. max as intercropping plants in two agroforestry systems. The results indicate that two agroforestry systems of F. moluccana-A. hypogaea and A. cadamba-G. max are feasible and applicable to rehabilitate the critical lands. The application of A. hypogaea as an intercropping plant in the agroforestry system of F. moluccana and A. hypogaea expended total cost as much as Rp. 10,985,000.00 ha-1 cs-1, and it obtained total revenue as much as Rp. 14.000.000,00 ha-1 cs-1, so it gave profit as much as Rp. 3,015,000.00 ha-1 cs-1. An agroforestry system of F. moluccana and A. hypogaea gives many benefits from the aspect of economy, social, ecology, and conservation. Total cost, total revenue, and profit of the application of G. max as an intercropping plant in the agroforestry system of A. cadamba and G. max, in the first year in the first cropping season, were Rp. 11,019,000.00 ha-1 cs-1; Rp. 3,500,000.00 ha-1 cs-1; and Rp. 7,519,000.00 ha-1 cs-1, respectively. Although G. max farm was not profitable to do in some critical lands, the agroforestry system of A. cadamba and G. max gave many benefits from the aspect of ecology and conservation.
Effects of habitat degradation and fragmentation on butterfly biodiversity in West Kotawaringin, Central Kalimantan, Indonesia HARMONIS HARMONIS; OSHLIFIN RUCMANA SAUD
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180208

Abstract

Harmonis, Saud OR. 2016. Effects of habitat degradation and fragmentation on butterfly biodiversity in West Kotawaringin, Central Kalimantan. Biodiversitasx 18: 500-506. The main purpose of this study was to examine the effects of degradation and fragmentation habitats to butterfly communities. To be specific, species diversity, taxonomy structure, main species in every study sites were observed to find out the effects and correlation of each parameters. Field study was carried out in 8 sites in Kotawaringin Barat, Central Kalimantan Province, Indonesia. The specimens were collected using aerial insect nets and baited traps in January-February 2016. From the result of the study, the total of 1085 individual in 130 species was successfully collected. Based on distribution analysis using Shannon-Wiener index, the diversity of butterfly was in the range of middle to high categories (H’ = 2.7-3.5). Of another parameter analysis, it showed that butterfly communities were affected by degradation habitat, while fragmentation habitat did not influence to the butterfly communities. Furthermore, the range of degradation level in the study sites did not correlate with the number of species and taxonomy structures, but the distribution of the special-group of main species showed in correlation. Lexias dirtea was only found in dense forests (site S-7), then Neptis hylas and Parantica agleoides appeared in shrub habitat (site S-5 and S-6). The finding indicated that green patches have valuable contribution to conserve the ecosystem as valuable germplasm for butterflies and also arthropods.
Dimension growth of Azadirachta excelsa and Phyllanthus spp. in agroforestry system NILASARI DEWI; NURHENI WIJAYANTO; GUSMAINI GUSMAINI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180207

Abstract

Dewi N, Wijayanto N, Gusmaini. 2017. Dimension growth of Azadirachta excelsa and Phyllanthus spp. in agroforestry system. Biodiversitas 18: 494-499. Azadirachta excelsa Jack. is one of the fast growing species which have high resistance to pest and disease, good quality of wood, and high economic value. A. excelsa planting can be integrated with Phyllanthus spp. in agroforestry system. The research about meniran and sentang in agroforestry system was conducted to analyze the influence of A. excelsa allelopathy towards the growth of meniran and to analyze the growth of both plants. This research was conducted for six months in Bogor, West Java. This study was divided into three parts, (i) analyze the effect of allelopathy in A. excelsa leaf and twig on the growth of P. urinaria and Phyllanthus debilis, (ii) analyze the growth of A. excelsa in monoculture and agroforestry systems and (iii) analyze the growth of meniran in monoculture and agroforestry systems. The result showed that leaf and twigs litter of A. excelsa did not have negative allelopathic effect for the growth of P. urinaria and P. debilis. Agroforestry system did not give significant effect to the growth of A. excelsa . Agroforestry systems reduced the growth of both P. urinaria and P. debilis due to light deficiency.
Short Communication: Coral reefs condition in Aceh Barat, Indonesia RUESMA AZHADIN ANNAS; ZAINAL A. MUCHLISIN; MUHAMMAD A. SARONG
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180210

Abstract

Annas RA, Muchlisin ZA, Sarong MA. 2017. Short Communication: Coral reefs condition in Aceh Barat, Indonesia. Biodiversitas 18: 514-519. The objective of the present study was to assess the condition of the coral reef ecosystems in the western region of Aceh Province. The study was conducted from September to November 2015 in two locations: Johan Pahlawan and Samatiga Subdistricts, and every location has two sampling sites. The Point Intercept Transect (PIT) method was used in this study. A total of two transects were used at 4-meter and 8-meter depth, respectively. The measured parameters were the percentage of live and dead coral covers, the number of genera, growth forms, species diversity, and dominance indices. Live corals were only found in Lhok Bubon, Samatiga Subdistrict, at 4-meter depth with a coral cover of 17.61%, and no corals were found at 8 meters. In addition, no live corals were also detected in Suak Indrapuri, Johan Pahlawan Subdistrict, at both 4-and 8-meter depth. There were five genera recorded in Lhok Bubon: Favites at 3.77% cover, Montastraea at 1.89% cover, and Montipora and Porites with coral covers of 8.18 and 3.14%, respectively. The diversity and dominance indices of live corals in Lhok Bubon were 1.94 and 0.45, respectively, indicating a low degree of diversity and predominant of Montipora. It is concluded that coral reefs condition in Aceh Barat was categorized as a severely damaged condition.
Short Communication: Assessment of genetic diversity in Lai (Durio kutejensis) local cultivars of Batuah (Indonesia) using ISSR marker FITRI HANDAYANI; SRIWULAN PAMUJI RAHAYU
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180212

Abstract

Handayani F, Rahayu SP. 2017. Assessment of genetic diversity in Lai (Durio kutejensis) local cultivars of Batuah (Indonesia) using ISSR marker. Biodiversitas 18: 525-529. Lai is an indigenous germplasm of Kalimantan which has potency to be developed as superior tropical fruit. Lai has attractive flesh color from yellow to reddish orange which represents the high content of carotene with smooth aroma or odorless fruit, and fruit storage period which longer than durian. Unfortunately, nowadays there is limited scientific information about its genetic diversity as important basic information for genetic conservation and breeding program. Batuah village in Kutai Kartanegara District is one of the center of origin and center of diversity of Lai in East Kalimantan, Indonesia which has many local cultivars with superior traits. The aim of this research was to study the genetic diversity of eight Lai local cultivars of Batuah village using molecular marker of ISSR. The total genomic DNA of eight Lai cultivars was isolated and was then used as template in the PCR amplification reaction using 10 ISSR primers. The result shows that similarity coefficient of eight Lai cultivars ranged between 0,34 and 0,58. Seven cultivars were grouped in the same cluster with 0,44 of similarity coefficient, while Lai Durian was separated in 0,34 of similarity coefficient. Genetically, the most similar existing cultivars are Lai Kuning and Lai Belimbing with the similarity coefficient of 0,58.

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