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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 53 Documents
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Search results for , issue "vol. 19 no. 4 (2018)" : 53 Documents clear
Fauna of mantids and orthopterans (Insecta: Mantodea, Orthoptera) of the Mordovia State Nature Reserve, Russia ALEXANDER B. RUCHIN; ANDREY P. MIKHAILENKO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190403

Abstract

Ruchin A, Mikhailenko AP. 2018. Fauna of mantids and orthopterans (Insecta: Mantodea, Orthoptera) of the Mordovia State Nature Reserve, Russia. Biodiversitas 19: 1194-1206. The data on the distribution and habitat confinement of one Mantodea species and 44 Orthoptera species in the Mordovia State Nature Reserve are given. Of these, one species of Orthoptera (Calliptamus italicus) is recorded for the first time for the Mordovia State Nature Reserve, four species (Mantis religiosa, Phaneroptera falcata, Conocephalus fuscus, Tettigonia caudata) are recently penetrated, one species (Conocephalus fuscus) is reported in the Republic of Mordovia for the first time. In the fauna of mantids and orthopterans of the Mordovia Reserve, three ecological groups were identified: polytopic, not confined to certain biotopes (14 species), hygrophilous representatives of intrazonal habitats (5 species) and xerophiles. Among the latter, there are species of extrazonal habitats (13 species) and confined to dry pine forests (7 species). The steppe group was not represented. For the three key habitats with the largest number of identified species, brief botanical descriptions are given. Factors influencing the species composition and current state of fauna of mantises and orthopterans of the Mordovia Reserve are discussed, and measures are proposed for the conservation of vulnerable species.
Molecular phylogeny of trees species in Tripa Peat Swamp Forest, Aceh, Indonesia inferred by 5.8S nuclear gen ZAIRIN THOMY; ARDHANA YULISMA; ESSY HARNELLY; ARIDA SUSILOWATI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190402

Abstract

Authors. 2018. Molecular phylogeny of trees species in Tripa Peat Swamp Forest, Aceh, Indonesia inferred by 5.8S nuclear gen. Biodiversitas 19: 1186-1193. Tripa peat swamp forest is protected areas that have high biodiversity. Nevertheless, in some areas, the damage occurred due to conversions of land function to oil palm plantations. The impact of conversions of peat swamp forest to oil palm plantations has led to biodiversity decreased. Hence, it is important to identify the remain tree species in Tripa peat swamp forest. This study aimed to determinetrees species diversity in Tripa peat swamp forest by using of 5.8S rRNA nuclear gene. Research was conducted at Forest Genetics and Molecular Forestry Laboratory, Faculty of Forestry, IPB from September 2015 to August 2016. Molecular identification consisted of DNA extraction, PCR analysis, and sequencing. The data were analyzed using Bioedit, MEGA 6, BLAST, and ITS2 database. Molecular identification using ITS 1 and ITS 4 primer successfully amplified (the ITS region ITS1-5.8S-ITS2) of 16 trees species from 9 families. BLAST analysis results indicate the presence of 16 species has similar bases sequence with the GeneBank DNA database. The plant species are Branckenridgea palustris (Ochnaceae), Gonystylus sp. (Thymelaeaceae), Tristaniopsis whiteana (Myrtaceae), Syzygium sp.1 (Myrtaceae), Macaranga triloba (Euphorbiaceae), Syzygium garciniifolium (Myrtaceae), Knema intermedia (Myristicaceae), Palaquium ridleyi (Sapotaceae), Palaquium sp. (Sapotaceae), Dyera lowii (Apocynaceae), Elaeocarpus petiolatus (Elaeocarpaceae), Ficus sp. (Moraceae), Syzygium leptostemon (Myrtaceae), Chilocarpus suaveolens (Apocynaceae), Alstonia pneumatophora (Apocynaceae), and Alstonia sp. (Apocynaceae). Phylogeny tree reconstruction using the Neighbor-Joining Method (NJ) showed that 5.8S rRNA nuclear gene was successful as marker for 16 trees species from 9 different families. In addition, the 5.8S also successful for resolving phylogenetic relationships at genus level i.e. Alstonia, Palaquium, Syzygium, Tristaniopsis, Macaranga, Elaeocarpus, and Ficus.
The effects of contaminant microorganism towards Chelonia mydas eggs hatchery results in Pangumbahan Green Sea Turtles Conservation, Sukabumi, Indonesia TOUFAN GIFARI; DEWI ELFIDASARI; IRAWAN SUGORO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190404

Abstract

Gifari T, Elfidasari D, Sugoro I. 2018. The effects of contaminant microorganism towards Chelonia mydas eggs hatchery results in Pangumbahan Green Sea Turtles Conservation, Sukabumi, Indonesia. Biodiversitas 19: 1207-1212. Green sea turtles (Chelonia mydas) is an endangered species, in which its population is continuously decreasing caused by a number of factors. Microorganisms are suspected to have important role in declining eggs hatching success. The aim of this study was to investigate the role of microbial contaminant on the egg hatching success at the green sea turtles conservation area in Pangumbahan needs. The microbial contaminants detection was carried out on the eggs at the semi-natural hatching nest. RAL with three times repetitions was selected to figure out the correlation between microbial contaminants and hatching success was. The eggs were incubated at three different depths, i.e., 40, 60, and 80 cm. The results showed that the Gram-negative microorganisms were from the coliform bacteria such as E. coli, Salmonella and Shigella. Meanwhile, the fungi were dominated by mildew and yeast. The hatching success rate was 93.34% in 80 cm depth, 85% in 60 cm depth and 60% in 40 cm depth. HSD Tukey test shows the effects of various nesting depths towards the hatchery percentage (p?0.05) with the correlation test of microorganisms contaminant shows negative value meaning the level of contaminant microorganism is an inverse proportion to the hatchery results.
The impacts of oil palm plantation establishment on the habitat type, species diversity, and feeding guild of mammals and herpetofauna ROZZA TRI KWATRINA; YANTO SANTOSA; M. BISMARK; NYOTO SANTOSO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190405

Abstract

Kwatrina RT, Santosa Y, Bismark M, Santoso N. 2018. The impacts of oil palm plantation establishment on the habitat type, species diversity, and feeding guild of mammals and herpetofauna. Biodiversitas 19: 1213-1219. Indonesia is the world’s largest producer of palm oil. Contributing 2.14% to the country’s gross domestic product, palm oil plays an important role in the national economy from plantation sector. However, the expansion of oil palm plantations has brought negative impacts to forests and wildlife. Little is known to what extent these negative impacts on mammals and reptiles can be reduced through better management. To address this knowledge gap, the current study assessed species diversity as affected by the establishment of the oil palm plantation in Central Kalimantan, a tropical biodiversity hotspot in Asia. We conducted 25 line transect surveys and visual encounter surveys in oil palm areas, shrubs and secondary forests in these landscapes. The results indicated that the establishment of oil palm plantation negatively impacted species abundance and diversity, and changed the mammal and reptile species composition, by favoring ecologically generalist species. For forest specialist species, forested areas like HCV and HCS, play an important role in maintaining habitat heterogeneity in oil palm landscapes. Mammal species found in habitat conditions following oil palm plantations belong to some feeding groups, whereas all species of herpetofauna have terrestrial habitat types. These mammal and herpetofauna species can live and function in the food chain in the oil palm plantation ecosystem.
Short Communication: The diversity of epipelic diatoms as an indicator of shrimp pond environmental quality in Lampung Province, Indonesia SUPONO SUPONO; SITI HUDAIDAH
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190406

Abstract

Supono, Hudaidah S. 2018. Short Communication: The diversity of epipelic diatoms as an indicator of shrimp pond environmental quality in Lampung Province, Indonesia. Biodiversitas 19: 1220-1226. Epipelic diatoms live by attaching to sediment. Their existence is strongly affected by water and sediment quality. The purpose of this research was to analyze the structure of epipelic diatom populations on the bottom of shrimp ponds and to determine the correlation between epipelic diatom diversity and the quality of water and of pond bottom sediment. This exploratory research was conducted on twelve shrimp ponds during the water preparation period (pre-stocking). Data were collected to analyze the correlation between water and sediment qualities. The results showed that Nitzschia and Pleurosigma were the dominant epipelic diatoms in the shrimp ponds. Epipelic diatom diversity in shrimp ponds was affected by water quality parameters (namely total alkalinity, organic matter and nitrate) as well as sediment quality parameters (namely cation exchange capacity, clay content and organic matter content).
Seasonal yield and composition of an inland artisanal fishery in a humic floodplain ecosystem of Central Kalimantan, Indonesia SULMIN GUMIR; ARDIANOR ARDIANOR; SYAHRINUDIN SYAHRINUDIN; GUSTI Z. ANSHARI; YUKIO KOMAI; KAZUO TAKI; HARUKUNI TACHIBANA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190401

Abstract

Gumiri S, Ardianor, Syahrinudin, Anshari GZ, Komai Y, Taki K, Tachibana H. 2018. Seasonal yield and composition of an inland artisanal fishery in a humic floodplain ecosystem of Central Kalimantan, Indonesia. Biodiversitas 19: 1181-1185. Seasonal yield of an inland artisanal fishery was studied in 2015 in the Takapan Floodplain Lake located along the Rungan River of Central Kalimantan Province-Indonesia. Record on daily fish catch consisting weight data and species composition was made in situ along with a one-year rainfall data that was collected from the nearest Meteorological Station located in Palangka Raya City airport. Results showed that throughout the year, total annual yield of captured fishes reached 4.8 tons comprised of 34 commercial freshwater fish species. Seasonal yield varied considerably in which fish capture was higher during the rainy season than on the dry season. The transition period from rainy to dry season was found to be the peak period of fish capture in the floodplain. Of the 34 fish species, the most abundant species was Channa striata that accounted to almost 50% of total annual fish yield. The two most abundant fishes, Channa striata, and Kryptopterus palembangensis were a top predatory blackfish and an omnivorous surface water whitefish, respectively. This result indicated that the studied floodplain habitat was still in good condition, however, conservation is needed to maintain the sustainability of freshwater fish resource in the future.
Short communication: A new record of Etlingera megalocheilos (Griff.) A.D. Poulsen (Zingiberaceae) in Sulawesi, Indonesia TRIMANTO TRIMANTO; LIA HAPSARI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190407

Abstract

Trimanto, Hapsari L. 2018. Short communication: A new record of Etlingera megalocheilos (Griff.) A.D. Poulsen (Zingiberaceae) in Sulawesi, Indonesia. Biodiversitas 19: 1227-1235. A through morphological examination has been conducted to a living specimen of Zingiberaceae collection of Purwodadi Botanic Garden, East Java which was collected from Pangi Binangga Nature Reserve, Central Sulawesi. The result showed that the characters of the species match very well with the description of Etlingera megalocheilos. The distribution of E. megalocheilos was previously reported to occur only in Sundaland includes Peninsular Malaysia, Singapore, Sumatra, Java, and Borneo. Thus, E. megalocheilos is a newly recorded species in Sulawesi; and confirmed that its distribution record now has expanded to Wallacea. The key morphological characters of E. megalocheilos are labellum hourglass-shaped, dull red or red to orange-red with the yellow margin, the anther is not covered by the corolla lobe, and have slightly angled filament. Detailed descriptions, photographs, and notes of the species are presented in this paper. Due to its high potential medicinal properties, further bioprospecting studies are necessary to conduct.
Social capital of the community in the management of Danau Sentarum National Park, West Kalimantan, Indonesia EMI ROSLINDA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190410

Abstract

Roslinda E. 2018. Social capital of the community in the management of Danau Sentarum National Park, West Kalimantan, Indonesia. Biodiversitas 19: 1249-1257. Many studies on the management of National Park have been conducted in various countries. This research highlights the management of Danau Sentarum National Park which is administratively located in West Kalimantan Province precisely in Kapuas Hulu District, from the view of social capital. The research method was surveyed using a quantitative approach. Social capital of the community in the area of Danau Sentarum National Park is still high/strong. Based on this fact, the management of the National Park that has been conducted by the government alone can collaborate with the management by community and collaborative management that pays a good attention to the minimum resistance and maximum synergy.
Antimicrobial activity of polyisoprenoids of sixteen mangrove species from North Sumatra, Indonesia SUMARDI SUMARDI; MOHAMMAD BASYUNI; RIDHA WATI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190409

Abstract

Sumardi, Basyuni M, Wati R. 2018. Antimicrobial activity of polyisoprenoids of sixteen mangrove species from North Sumatra, Indonesia. Biodiversitas 19: 1243-1248. Mangroves including those that are distributed in the coast of North Sumatra contain polyisoprenoid with varying levels of polyprenol and dolichol constituents. Differences in polyisoprenoid levels were closely related to the salinity of sea but the information about their biological activities is scarce. The present study aimed to describe the biological activities, antimicrobial, antioxidant, and antifungal effects of polyisoprenoid extracts from sixteen mangrove species of North Sumatra, Indonesia. Polyisoprenoids were isolated from mangrove leaves and tested for their antimicrobial activity against Escherichia coli, Staphylococcus aureus, and Candida albicans. Meanwhile, their antioxidant activity was represented by their capacity in scavenging DPPH (2,2-diphenyl-1-picrylhydrazyl) free-radical agents. The most predominant polyisoprenoids found in sixteen mangrove leaf extracts was dolichols (75%). Polyprenols-dominant species, Acacia auriculiformis, Hibiscus tiliaceus, Pongamia pinnata, and Ricinus communis, and dolichols-dominant species, Avicennia lanata, Av. marina, Av. officinalis, Barringtonia asiatica, Bruguiera gymnorrhiza, Calophyllum inophyllum, Nypa fruticans, and Pandanus odoratissimus, inhibited the growth of E. coli and S. aureus. However, the antioxidant activity of those sixteen mangrove species was of a weak category. Surprisingly, all other mangroves polyisoprenoid extracts did not inhibit C. albicans growth. This study suggested that polyisoprenoids in mangroves have potential antibacterial properties to be developed further.
Bacterial symbionts of acroporid corals: Antipathogenic potency against Black Band Disease DIAH PERMATA WIJAYANTI; AGUS SABDONO; PRASTYO ABI WIDYANANTO; DIO DIRGANTARA; MICHIO HIDAKA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190408

Abstract

Wijayanti DP, Sabdono A, Widyananto PA, Dirgantara D, Hidaka M. 2018. Bacterial symbionts of acroporid corals: Antipathogenic potency against Black Band Disease. Biodiversitas 19: 1236-1242. Black Band Disease (BBD), an infectious coral disease which can cause a rapid decline of coral reefs, has appeared as a serious threat -to many reefs around the world including Karimunjawa National Park, Java Sea. Although it had been studied for more than 30 years, control of disease remains obscure. In the present research coral symbiont bacteria having antipathogenic activity against Black Band bacterial associate were screened and characterized. Fourteen out of 87 bacteria isolates derived from healthy corals showed antagonism against the Black Band bacterial strains. The isolates were then re-examined using disc-diffusion method to confirm the initial observation. The CI6 showed the strongest ability to inhibit BAFBB5, a bacterial strain associated with the BBD. Following the partial sequencings of 16S rDNA, the results indicated that the CI6 isolate was closely related to Virgibacillus salarius strain SA-Vb1, while the BBD associate isolate has strong relation with Virgibacillus marismortui. The results have shown that bacterial strains derived from healthy acroporid corals have potential to be used as a biocontrol agent against BBD.

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