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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 65 Documents
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Search results for , issue "vol. 23 no. 10 (2022)" : 65 Documents clear
Species, nutritional value, and elemental content of Stenochlaena distributed in Central Kalimantan, Indonesia HASTIN ERNAWATI NUR CHUSNUL CHOTIMAH; MULIANSYAH MULIANSYAH; WAHYU WIDYAWATI; PITRAMA PITRAMA; HAIRU SUPARTO
Biodiversitas Journal of Biological Diversity Vol. 23 No. 10 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d231047

Abstract

Abstract. Chotimah HENC, Muliansyah, Widyawati W, Pitrama, Suparto H. 2022. Species, nutritional value, and elemental content of Stenochlaena distributed in Central Kalimantan, Indonesia. Biodiversitas 23: 5367-5372. Stenochlaena J. Smith is belonging to the family of Blechnaceae, consisting of only seven species and widely distributed in tropical and subtropical regions. In Central Kalimantan Indonesia, Stenochlaena is also widely distributed and abundant in this province. The paper will deliver the diversity of species, and chemical composition value of Stenochlaena in Central Kalimantan. The method used was a survey conducted in the tree district of Central Kalimantan namely Barito Selatan, Kapuas, and Palangka Raya. The key to species determination used was a paper published by Chamber (2013). Chemical composition was measured by proximate analysis while elemental content was established by atomic absorption spectrophotometer. This is the first report on the proximate and element components of some Stenochlaena species, other than Stenochlaena palustris. The results showed that there were four species of Stenochlaena found in Central Kalimantan, namely Stenochlaena palustris, Stenochlaena tenuifolia, Stenochlaena milnei and Stenochlaena cumingi. Stenochlaena palustris had the greatest moisture and proteins while S. cumingii had the highest content of ash. The biggest content of lipids was owned by S. milnei meanwhile S. tenuifolia had the most content of fiber. Stenochlaena palustris also had the highest N, P, K, Mg meantime, the highest Ca and Fe were in S. cumingii and S. milnei, respectively.
Isolation and identification of potential host probiotic bacteria from Malaysian mahseer, Tor tambroides for aquaculture practices MOHAMMOD KAMRUZZAMAN HOSSAIN; Shumpei Iehata; Noordiyana Mat Noordin; Md. Abdul Kader; Sharifah Noor Emilia; Yeong Yik Sung; Ambok Bolong Abol-Munafi
Biodiversitas Journal of Biological Diversity Vol. 23 No. 10 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d231053

Abstract

Abstract. Hossain MK, Iehata S , Noordin NM, Kader MA, Emilia SN, Sung YY, Abol-Munafi AB. 2022. Isolation and identification of potential host probiotic bacteria from Malaysian mahseer, Tor tambroides for aquaculture practices. Biodiversitas 23: 5423-5430. The digestive tract has been revealed as a reservoir of potential probiotics derived from the host. The goal of this study was to isolate, identify, and characterize putative host-associated probiotic bacteria (HAPs) from the digestive tract of Malaysian mahseer Tor tambroides. To evaluate potential T. tambroides HAPs, in-vitro digestive enzyme activity (such as a cellulolytic, proteolytic, and lipolytic activity) and antibacterial activity against two fish pathogens (Vibrio parahaemolyticus and Aeromonas hydrophila) were utilized. Thirty-seven isolates with digestive enzyme activities were tested for their ability to inhibit pathogenic bacteria growth using an agar well-diffusion assay. Three isolates displayed in-vitro suppression of pathogenic bacteria, with two strains (KT03 and KM07) inhibiting the growth of V. parahaemolyticus and one strain (KT27) suppressing the proliferation of both harmful bacteria (V. parahaemolyticus and A. hydrophila). Strains KT03 and KM07 exhibited the most resemblance to Enterococcus faecalis (strains 2674 and FC11682, respectively) based on 16S rRNA sequences, whereas KT27 had a 97% similarity to Aeromonas sp. A8-29. The study’s findings provide valuable data on the prospective use of these three isolates (KT03, KT27, and KM07) as potential HAPs for better understanding their physiological activities, such as growth and disease resistance on T. tambroides.
Taxonomy and molecular phylogeny analysis of the genus Diogenes “Edwardsii group” (Decapoda: Anomora: Diogenidae) based on mitochondrial DNA sequences TYANI FITRIAN; HAWIS MADDUPPA; MEUTIA SAMIRA ISMET; DWI LISTYO RAHAYU
Biodiversitas Journal of Biological Diversity Vol. 23 No. 10 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d231040

Abstract

Abstract. Fitrian T, Madduppa H, Ismet MS, Rahayu DL. 2022. Taxonomy and molecular phylogeny analysis of the genus Diogenes “Edwardsii group” (Decapoda: Anomora: Diogenidae) based on mitochondrial DNA sequences. Biodiversitas 23: 5302-5313. Many variations of morphological characters differ from one species to another, showing high interspecific variation within the genus Diogenes Dana, 1851. Subtle morphological differences among certain species make it difficult to identify diagnostic characters. Although the genus is very speciose, the study on the molecular is poorly reported. This study aimed to evaluate the taxonomy and phylogeny of the genus Diogenes using morphological and molecular features. The molecular phylogeny of 15 species of Diogenes included in the "Edwardsii group" was constructed based on two mitochondrial genes COI and 16S rRNA. The results of the phylogeny tree construction based on concatenated mitochondrial genes COI and 16S rRNA mtDNA formed 5 clades of monophyletic. Phylogenetic relationships of Diogenes species based on concatenated mitochondrial genes COI and 16S rRNA sequenced suggest that the morphological and molecular analyses of the species in this study corroborated one another. Among 15 species studied, three species were challenging to identify due to their resemblance to other species traits. The phylogenetic tree demonstrates that the three taxa denoted by 'sp.' were different from the known species of Diogenes so far. Diogenes sp.1 was closely related to Diogenes moosai Rahayu & Forest, 1995, Diogenes sp.2 resembles Diogenes laevicarpus Rahayu, 1996, while Diogenes sp.3 was closely related to Diogenes goniochirus Forest, 1956.
Identification of new species record of Cyanophyceae in Diyala River, Iraq based on 16S rRNA sequence data FIKRAT M. HASSAN; WAEL M. MAHDI; HALAH H. AL-HAIDERI; DHIAA W. KAMIL
Biodiversitas Journal of Biological Diversity Vol. 23 No. 10 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d231033

Abstract

Abstract. Hassan FM, Mahdi WM, Al-Haideri HH, Kamil DW. 2022. Identification of new species record of Cyanophyceae in Diyala River, Iraq based on 16S rRNA sequence data. Biodiversitas 23: 5239-5246. The biodiversity and water quality of the Diyala River require screening water in terms of biological contamination, because it is the only water source in Diyala City and is used for many purposes. This study aimed to identify a new species record of Cynaophyceae and emphasize the importance of using molecular methods beside classic morphological approaches, particularly in the water-shrinkage-aqua system. Five different sites along Diyala River were selected for Cyanophyceae identification. Morphological examination and 16S rRNA sequence analysis was conducted, and the phylogenetic tree was constructed using Mega 6 Programme. The morphological examination of samples showed a total of 28 species corresponds to Cyanophyceae, including one species of Spirulina. In our study of 28 identified species, three new species record were identified in Diyala River. The newly recorded species were confirmed by 16S rRNA and the phylogenetic tree construction. The species are registered in the National Centre for Biotechnology Information (NCBI) with the following accession numbers: Arthrospira indica (MW854667.1), Arthrospira platensis (MW854665.1), and Limnospira fusiformis (MW854666.1). Most notably, Arthrospira platensis is not listed in the checklist of Iraqi algae. Thus, these species are considered as a new record of Iraqi algal flora. The identification of new species record in Diyala River reflexes the impact of climate change on this river, and the necessity to use 16S rRNA to identify microalgae in all ecosystems.
Community distribution and utilization of gastropods in the Coastal Area of Liki Island, Sarmi District, Papua, Indonesia PUGUH SUJARTA; MARZELINE GESTY MAILISSA; HENDERINA JOSEFINA KEILUHU; SUWARNO HADISUSANTO; SARAH YULIANA
Biodiversitas Journal of Biological Diversity Vol. 23 No. 10 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d231006

Abstract

Abstract. Sujarta P, Mailissa MG, Keiluhu HJ, Hadisusanto S, Yuliana S. 2022. Community distribution and utilization of gastropods in the Coastal Area of Liki Island, Sarmi District, Papua, Indonesia. Biodiversitas 23: 5001-5011. Gastropods and snails are mollusk phylum animals with diverse species that inhabit and spread in various marine ecosystems. The main objective of this study was to determine the structure of gastropod communities and their utilization in the coastal area of Liki Island, Sarmi District, Papua, Indonesia. Samples of gastropods were collected through descriptive-quantitative surveys using the line-transects technique. In addition, information on the utilization of gastropods was collected from surveys with semi-structural interviews with selected respondents from Liki Island, the outermost island in East Indonesia, with a total area of 1318.54 ha. The result showed a total of 1812 living specimens from 63 species of gastropods from 23 families, collected from six sampling stations, with 182-603 specimens on average. There were five species of gastropods encountered in all sampling stations, namely Conus litteratus (family of Conidae), Monetaria moneta, Monetaria annulus (Cypraeidae), Oxymeris crenulata (Terebridae), and Polinices flemingianus (Naticidae). The highest Importance Value Index (IVI) belonged to Nerita albicilla (Neritidae) from Station 1 (IVI 58.45). In contrast, the lowest belonged to the species of Nassarius limnaeiformis (Nassariidae), Oliva caerulea, and Oliva oliva (Olividae) from Station 4 (each IVI 2.56), with the moderate value of Shannon-Wiener Diversity Index and low value of Dominance Index. People in the coastal area of Liki Island use 12 species of gastropod as wall ornaments and consume 12 species of gastropod, as well. In general, the people of Liki Island use gastropods wisely based on the socio-cultural characteristics of the local community.
Provenance variation in seed storability of jabon (Neolamarckia cadamba) and their response to seed invigoration by priming and gamma irradiation treatments DEDE J. SUDRAJAT; EVAYUSVITA RUSTAM; NURIN WIDYANI
Biodiversitas Journal of Biological Diversity Vol. 23 No. 10 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d231014

Abstract

Abstract. Sudrajat DJ, Rustam E, Widyani N. 2022. Provenance variation in seed storability of jabon (Neolamarckia cadamba) and their response to seed invigoration by priming and gamma irradiation treatments. Biodiversitas 23: 5074-5084. Jabon (Neolamarckia cadamba (Roxb.) Bosser) is a tree species native to Indonesia with a wide growth distribution and high economic potential, but the cultivation of this species is often hampered by low seed viability and vigor, especially for seeds that have undergone storage. This study aims to examine the provenance variation in seed germination and storability of N. cadamba and the effectiveness of invigoration treatments on the stored seed for 5 years. Hydro-priming, osmo-priming, hormone-priming, and gamma irradiation were tested to improve seed germination and seedling growth. The results showed that intra-population variation in seed germination and storability is quite high, ranging from 53.5%-82.8% for germination capacity and rate of germination decline ranging from 0.7%-61.6% after 5 years of storage. Pomalaa provenance had the best seed germination and storability compared to other provenances. The invigoration treatment significantly affected germination and seedling growth of all provenances. Hydro-priming with aquades for 48 hours gave the best germination capacity for Pomalla and Batuhijau provenances. For low initial germination, such as seed from Kapuas, Alas Purwo, and Kampar, the GA3 500 ppm for 48 hours and PEG -1.2 MPa for 24 hours treatments could improve seed viability and vigor. GA3 and gamma irradiation gave the best seedling growth, although other treatments, such as PEG -0.8 MPa for 24 hours, also could increase seedling height and biomass of Kampar provenance. In general, the effectiveness of the invigoration treatment depends on the initial physiological conditions, the invigoration method, and its concentration.
Expression of SIX1b and SIX1c effector genes and banana resistance genes during Foc TR4 infection on banana cultivars AZIZAH RIDHA ULILALBAB; SRI WIDINUGRAHENI; MASANTO MASANTO; SITI SUBANDIYAH; ARIF WIBOWO
Biodiversitas Journal of Biological Diversity Vol. 23 No. 10 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d231041

Abstract

Abstract. Ulilalbab AR, Widinugraheni S, Masanto, Subandiyah S, Wibowo A. 2022. Expression of SIX1b and SIX1c effector genes and banana resistance genes during Foc TR4 infection on banana cultivars. Biodiversitas 23: 5314-5322. The relative expression SIX1 genes isolates of Foc TR4 and banana resistance genes have not been intensively studied. This study aimed to determine the expression of SIX1 genes of Foc TR4 and banana resistance genes. Twelve Foc TR4 isolates were collected from several regions in Indonesia. DSI analysis was performed to categorize their virulence levels. The representative Foc TR4 isolates from different virulence levels were artificially inoculated on the Musa acuminata Colla Cavendish subgroup and cv. Barangan and incubated for 48, 72, and 96 HPI. The expressed genes were quantitatively analyzed using the qPCR technique using primers to amplify SIX1b, SIX1c, chitinase, and PR-protein 1 genes. The results categorized the virulence of Foc TR4 isolates into moderate, virulent, and high virulent. The isolates of KJG and Batu-4 were selected for gene expression study representing moderate and high virulent groups, respectively. The results of in planta assay found that the expression of SIX1b, SIX1c, chitinase, and PR-protein1 was upregulated on the inoculated plants during the incubation period. However, the expression of these genes was increasingly upregulated in both bananas at early-stage inoculation. We assumed that plant defense genes of bananas might actively encounter the common virulence mechanisms of Foc TR4 at the initial stage of inoculation.
Papeja, herbal potions during breastfeeding in Madura (Indonesia): The use, perceived effectiveness, and documentation of the plants used SITI MUSLICHAH; RODIYATI AZRIANINGSIH; SERAFINAH INDRIYANI; ESTRI LARAS ARUMINGTYAS
Biodiversitas Journal of Biological Diversity Vol. 23 No. 10 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d231021

Abstract

Abstract. Muslichahah S, Azrianingsih R, Indriyani S, Arumingtyas EL. 2022. Papeja, herbal potions during breastfeeding in Madura (Indonesia): The use, perceived effectiveness, and documentation of the plants used. Biodiversitas 23: 5139-5148. The World Health Organization recommends breastfeeding as the normal infant feeding method. However, many women often face challenges in breastfeeding their infants. One of the challenges may be a real or perceived insufficient milk supply. Poor breast milk production is the common cause of breastfeeding failure in preterm babies. In Indonesia, Madurese women use Papeja (herbal medicines) as a herbal potion to enhance breast milk production. Hence, this study aims to identify the pattern of use, perceived effectiveness, and galactagogues plant component of Papeja taken by mothers during breastfeeding in the Sub-districts of Guluk-Guluk and Pasongsongan, Sumenep District. The data were collected through interviews using a semi-structured questionnaire. Sixty women who had agreed to be interviewed, 18 years or older, breastfeeding or breastfeeding in the past 24 months, and two traditional midwifery in the study area were interviewed. We used simple descriptive statistics to summarize the data on demographic, respondent attitudes, and galactagogues plants. Most participants (n = 48) perceived that the herbal galactagogues effectively promoted breastfeeding adequacy. We identified 46 plants from 27 families to have been used in Papeja. Some of the plants used by the mothers have been recorded as having benefits for enhancing milk supply, some have not had that information, but most have not yet been chemically tested. Thus, it is important to validate the plants scientifically for possible galactagogues properties, which can be harnessed for future use. Since we recorded those plants as ethnomedicinal and therapeutic plants, phytochemical and pharmacological investigations are recommended because this could lead to developing new medicine to address poor milk production among mothers.
Evaluation of seagrass beds as a foraging and nursery habitat based on the structure of the fish community in Nusmapi Island, West Papua, Indonesia EMMANUEL MANANGKALANGI; LUKY SEMBEL; SELVI TEBAIY; AGNESTESYA MANUPUTTY; MINA REGINA RUMAYOMI; PHILIPUS MUSYERI; DODDY SAWAKI; DAUD ORISSU; ABRAHAM WILLIAM MANUMPIL; YUANIKE KABER
Biodiversitas Journal of Biological Diversity Vol. 23 No. 10 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d231024

Abstract

Abstract. Manangkalangi E, Sembel L, Tebaiy S, Manuputty A, Rumayomi MR, Musyeri P, Sawaki D, Orissu D, Manumpil AW, Kaber Y. 2022. Evaluation of seagrass beds as a foraging and nursery habitat based on the structure of the fish community in Nusmapi Island, West Papua, Indonesia. Biodiversitas 23: 5539-5550. Seagrass beds are one of the ecosystems inhabited by various coastal aquatic fauna, including fish. However, information on the temporal role of this ecosystem for fish fauna, particularly diurnal and nocturnal, is still limited. Therefore, this study was conducted to describe daily variations in the fish species composition, their ecological index, developmental stages, and trophic groups in a seagrass bed on Nusmapi Isl., Manokwari. The species composition differed between day and night sampling periods based on the results obtained from 40 species of fish belonging to 21 families and 7 orders. Furthermore, fish species consisted of three trophic groups (omnivores, carnivores, and herbivores), with omnivores and carnivores dominating during the day and at night by 48.6% and 87.5%, respectively. Species found in seagrass beds majorly consisted of juvenile stage individuals (65.9%). Individual abundance varied from day to night and was mainly found among group-forming species, such as S. spinus, S. trilineata, S. punctatissimum, and M. pralinia. The index of diversity, evenness, and dominance at the two relatively similar sampling times described the overall stability of fish communities in seagrass beds. The results indicate that seagrass beds serve as foraging and nursery grounds for many fish species in coastal waters. In addition, the management and protection of fish biodiversity and coastal fishery resources are affected by the ecosystem function.
Effect of farmer's behavior in cocoa management on insect diversity in Salayo Cocoa Plantation, West Sumatra, Indonesia Siska Rosalia; Yonariza Yonariza; My Syahrawati
Biodiversitas Journal of Biological Diversity Vol. 23 No. 10 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d231013

Abstract

Abstract. Rosalia S, Yonariza, Syahrawati M. 2022. Effect of farmer's behavior in cocoa management on insect diversity in Salayo Cocoa Plantation, West Sumatra, Indonesia. Biodiversitas 23: 5064-5073. The behavior of farmers in cocoa cultivation will affect the cocoa (Theobroma cacao) plantation environment and all living things in it, including insects. Disruption of insect diversity will also affect the ecosystem services insects provide, especially those related to improving the quality and quantity of agricultural products, especially cocoa. This study aimed to determine and analyze the diversity of insects in cocoa plantations and the role of insects in the ecosystem. This research was carried out at the Salayo Cocoa Plantation, a small-scale farmers' cocoa plantation in Nagari Salayo, Kubung District, Solok Regency, and the Bioecology Laboratory, Plant Protection Department, Faculty of Agriculture, Andalas University, from July to October 2021. Insect collection was carried out using pitfall traps, yellow sticky traps, light traps, and spraying with insecticides. Insect sampling was carried out three times. The results showed that in cocoa plantations in Nagari Salayo, Kubung District, Solok Regency, insects from 12 orders, 31 families, and 58 species with a total number of 750 individuals were found, and insect diversity was in the range of 1-3322. Based on their role, the collected insects can be divided into pests, decomposers, pollinators, predators, parasitoids, and neutral insects. The richness and abundance of herbivores were lower than carnivores (predators and parasitoids). The predators with the highest number were Formicidae (Hymenoptera). Good farmer behavior in managing the cocoa plantation can maintain insect diversity and the sustainability of ecosystem services provided by insects.

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