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INDONESIA
Jurnal AgroBiogen
Published by Kementerian Pertanian
ISSN : 19071094     EISSN : 25491547     DOI : -
Core Subject : Agriculture,
Agriculture, Biological Sciences & Forestry
Jurnal AgroBiogen memuat artikel primer dan sekunder hasil penelitian bioteknologi dan sumberdaya genetik tanaman, serangga, dan mikroba pertanian. Jurnal ini diterbitkan tiga kali setahun pada bulan April, Agustus dan Oktober oleh Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumberdaya Genetik Pertanian
Arjuna Subject : -
Articles 7 Documents
 1 
Search results for , issue "Vol 15, No 1 (2019): June" : 7 Documents clear
Molecular Breeding for Developing A New Upland Rice Variety ‘Bio Patenggang Agritan’ Dwinita Wikan Utami; Maulidia Rahmawati; Siti Yuriyah; Ahmad Dadang; Siti Nurani; Nurul Jadid
Jurnal AgroBiogen Vol 15, No 1 (2019): June
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jbio.v15n1.2019.p1-10

Abstract

Situ Patenggang is an elite upland rice variety well-accepted by farmers, but recently this variety started to be attacked by blast disease (Pyricularia grisea) that causes yield loss up to 50%. To overcome this problem, Bio Patenggang variety has been developed through molecular breeding using blast-resistant monogenic lines as donor parents. The aim of this research was to present molecular breeding approach of Bio Patenggang development, including steps from the phenotypic selection on candidate lines to the genotypic analysis assisted by molecular markers. The phenotypic performances were assessed using Distinctness, Uniformity, and Stability (DUS) testing by following the standard method stated in the rice test guidelines. The genotypic analyses were performed using foreground and background markers. Four BC3F7 lines were selected as the candidates of the Situ Patenggang-derived variety. Based on ANOVA and Principal Component Analysis (PCA), phenotypic performances of the four lines demonstrated no significant differences with that of Situ Patenggang. The selected lines have also passed the foreground analysis confirming that the lines contained Pita, Pii, Pik-p, and Pia last resistance genes. Background analysis showed that the selected lines demonstrated agronomic perfomances very similar to that of Situ Patenggang. Association analyses showed that 14 markers were associated with the target traits and 10 out of the 14 markers were identified as co-segregation markers. The four selected lines, therefore, were proposed to be released as Situ Patenggang-derived variety. One of the lines (Sta-8-S15-TB16) has been approved to be released as a new variety, namely ‘Bio Patenggang Agritan’.
Molecular Analysis and Adaptation Test of Code-qTSN4 and Code-qDTH8 Rice Lines nFN Tasliah; nFN Ma'sumah; Joko Prasetiyono
Jurnal AgroBiogen Vol 15, No 1 (2019): June
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jbio.v15n1.2019.p11-22

Abstract

Rice lines for increasing grain yield derived from Code variety that have loci associated to the spikelet number and early heading date (qTSN4 and qDTH8 locus, respectively) have been developed. The objectives of this research were to molecularly analyze, to evaluate the yield of Code-qTSN4 and Code-qDTH8 lines in the field, and to obtain the lines with yield potential of at least 10% higher than that shown by Code. The study was conducted in October 2016 to March 2017. The study was divided into two activities: molecular verification of the qTSN4, qDTH8, and Xa7 loci using specific markers and field trials at two locations in West Java, i.e. Sukamandi Experimental Station and Cianjur farmer’s paddy field. The genetic materials used were 56 rice genotypes consisted of 49 lines (Code-qTSN4 and Code-qDTH8) and 7 check varieties. Molecular analysis showed that all rice lines tested contained qTSN4, qDTH8, and Xa7 loci. All of the loci were in homozygous stage indicating that they were pure lines. Field trial results showed that Cianjur location gave much better on yield component variables than that in Sukamandi. The highest increase in spikelet number was shown by B6-4 planted at Cianjur with increase of 30.06% and B12-2 planted at Sukamandi with increase of 25.15% compared to Code. Both lines were classified as Code-qTSN4 line group. The qTSN4 and qDTH8 loci proved to increase yield more than 20% compared to Code. A total of 34 lines resulted from this study can be used for advanced yield trials conducted at several agro-ecologically different locations.
Expression and Characterization of Recombinant β-1,3-Glucanase of Burkholderia cepacia (BiogenCC E76) Expressed in Escherichia coli Expression Systems Tri Puji Priyatno; Fitriani Winangsih; Ifa Manzila; Maria Bintang
Jurnal AgroBiogen Vol 15, No 1 (2019): June
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jbio.v15n1.2019.p35-44

Abstract

Burkholderia cepacia (Bcc) BiogenCC E76 isolate is an endophytic bacterium producing cell wall degrading enzyme, glucanase, and antagonistic to fungal pathogens, such as Magnaporte grisea and Colletotrichum gloeosporioides. The glucanase is able to lyse fungal cell walls composed of glucan causing disintegrity of mycelia and fungi fail to infect plants. The purpose of this study was to clone, express, and characterize 48 kDa subunit of β-1,3-glucanase from Bcc isolate BiogenCC E76 using the Escherichia coli expression system. The 1,300 bp of the β-1,3-glucanase gene was constructed using the pET-32b vector in BamHI-HindIII restriction sites to generate the pET-Glu plasmid. The gene was fused with nucleotides sequence encoding Trx-tag, His-tag, and S-tag producing 65 kDa of recombinant β-1,3-glucanase. Gene expression in the construct was controlled by the T7 promoter and Trx-tag start codon through IPTG induction. The recombinant β-1,3-glucanase was then purified and its activities were tested at different pH and temperature conditions. Results showed that E. coli carrying pET-Glu overexpressed a 65 kDa protein in induced culture as a soluble protein that was expressed in periplasm. Purification result of the crude extract of the recombinant protein obtained 27% pure enzymes with a specific activity of 1,207.976 U/mg and purity level of 3.9 fold. This recombinant glucanase demonstrated optimal activity at 40°C and pH 5–7. A deeper study is needed to understand the role of 48 kDa subunit of β-1,3-glucanase has in antagonistic mechanism of Bcc against pathogenic fungi.
Response of Anther Donor Genotypes (F1) from Indica x Indica Crosses to Rice Anther Culture Iswari Saraswati Dewi; Nuha Hera Putri; Bambang Sapta Purwoko
Jurnal AgroBiogen Vol 15, No 1 (2019): June
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jbio.v15n1.2019.p45-52

Abstract

Anther culture is one of the in vitro techniques that can be used to accelerate the obtainment of purelines in the form of dihaploid (DH) plants resulted from androgenesis. The objectives of this research were to study response of anther donor genotypes in rice anther culture of F1 populations derived from indica x indica crosses and obtain spontaneous DH lines to be used further for variety development program. Anther donor plant used for the experiment consisted of four kinds of F1 populations derived from single crosses, i.e. IR85/I-5, BioR-81/I-5, Bio-R81/O18, and BioR-82/O-18. The result indicated that kindy of all F1 plants showed similar response to callus induction, but significatly different responses to plant regeneration. Genotypes of anther donor plants (F1) significantly affected the percentage of calli producing green plantlet, but not significantly affected the percentage of calli producing albino plantlet. Anther culturability of anther donor plants (F1) was relatively high, ranged from 2.0 to 7.0%. A total of 73 first generation of spontaneous DH lines (38.8%) from the grew out green plantlets was obtained from this study. The resulted DH lines are readily available to be selected and be used in rice cultivar development program.
Front Matter JA Vol 15 No 1 Jurnal AgroBiogen
Jurnal AgroBiogen Vol 15, No 1 (2019): June
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jbio.v15n1.2019.p%p

Abstract

Genetic Diversity of Jatropha spp. Germplasm Based on Morphological and Molecular Markers Rerenstradika T. Terryana; Kristianto Nugroho; Karden Mulya; I Made Tasma; Puji Lestari
Jurnal AgroBiogen Vol 15, No 1 (2019): June
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jbio.v15n1.2019.p23-34

Abstract

Germplasm of Jatropha spp. with high genetic diversity is needed to develop a new superior variety of Jatropha spp. Morphological and molecular characterizations are important to support development of their superior hybrid varieties. The aims of this study were to identify Jatropha spp. accesion potential for genetic improvement using morphological characters and analyze their genetic diversity using SSR markers. A total of eight genotypes of Jatropha spp. originated from several localities in Indonesia and Thailand was observed. Results showed that accessions of Jatropha spp. were varied in morphological and molecular characters. Based on principle component analysis, characters of stem color, leaf veins, leaf shapes, flower position, total branch number, productive branch number, petiole color, and petal color contributed most to the total diversity. Based on oil seed content, potential accessions identified for further genetic improvement were J. podagrica (34.63%) and J. curcas (29.64%). The results of molecular analysis showed that high allele variation (3–7 alleles) was observed among Jatropha spp. accessions with an average allele number of 4.12 and the average Polymorphism Information Content (PIC) value was 0.57 (0.46–0.77). Three SSR markers showed PIC value >0.5 indicating that these markers were informative for genetic diversity detection of Jatropha spp. The phylogenetic analysis showed that seven accessions of Jatropha spp. could be divided in two groups at similarity coefficent of 0.53. Results of genetic diversity analysis in this study should be useful for proper identification and selection for appropriate parents to assist in breeding of Jatropha spp. in Indonesia.
Back Matter JA Vol 15 No 1 AgroBiogen, Jurnal
Jurnal AgroBiogen Vol 15, No 1 (2019): June
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jbio.v15n1.2019.p%p

Abstract

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