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All Journal Biodiversitas Journal of Biological Diversity
ROMANUS EDY PRABOWO
Faculty of Biology, Universitas Jenderal Soedirman. Jl. Dr. Soeparno 63, Purwokerto Utara, Banyumas 53122, Central Java, Indonesia
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

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Molecular characteristics and taxonomic status of morphologically similar barnacles (Amphibalanus) assessed using the cytochrome c oxidase 1 gene Sri Riani; ROMANUS EDY PRABOWO; Agus Nuryanto
Biodiversitas Journal of Biological Diversity Vol. 22 No. 3 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d220349

Abstract

Abstract. Riani S, Prabowo RE, Nuryanto A. 2021. Molecular characteristics and taxonomic status of morphologically similar barnacles (Amphibalanus) assessed using the cytochrome c oxidase 1 gene. Biodiversitas 22: 1456-1466. Amphibalanus variegatus and A. reticulatus have similar external morphology. Morphological similarities can be a severe problem for direct species-level identification. The problem can be overcome through anatomy-based identification and validated through molecular barcoding. Molecular characterization using the cytochrome c oxidase 1 (COI) gene provides a useful tool for precise species identification. This study attempted to assess the molecular characteristics of morphologically similar barnacle (Amphibalanus) specimens collected at five localities in Indonesia to validate their taxonomic status. Forty-five barnacle specimens were collected during the field trips in Lampung, Jakarta, Semarang, Bali, and Lombok. The COI gene was amplified using LCO1490 and HCO2198 primers. The gene was sequenced using bidirectional sequencing at 1st base Asia. The specimens' taxonomic status was determined based on sequence identity, genetic distance, monophyly, nucleotide compositions, and nucleotides in a particular position. Shell shapes-based identification placed barnacle specimens into A. reticulatus. However, anatomical-based identification placed barnacle samples into two different anatomic groups, which was further validated by molecular data that two anatomic groups of Amphibalanus samples have significant differences in their COI gene. Based on the molecular characteristics, 43 samples were identified as A. reticulatus, while the two remaining samples were identified as A. variegatus.
Nematode functional traits and community structure change from river to the terrestrial border in Segara Anakan Mangrove, Indonesia ARDHINI RIN MAHARNING; ERWIN RIYANTO ARDLI; ROMANUS EDY PRABOWO
Biodiversitas Journal of Biological Diversity Vol. 24 No. 4 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240459

Abstract

Abstract. Maharning AR, Ardli ER, Prabowo RE. 2023. Nematode functional traits and community structure change from river to the terrestrial border in Segara Anakan Mangrove, Indonesia. Biodiversitas 24: 2434-2446. We intended to explore the spatial distribution of nematode functional traits and community structure in Segara Anakan Mangrove, Indonesia. Samples were retrieved from 14 stations, extending from the river to the area adjacent to terrestrial forest. We used taxonomic and functional trait identification, covering body shape, length, tail shape, feeding type, and life history as independent traits, and combined traits by collecting traits describing individual nematodes. The principal component analysis suggested that predatory or omnivorous or long-size nematodes mainly inhabited stations adjacent to the terrestrial forest but were unclear for the mid-stations. There were 29 combined traits and 38 genera of nematodes observed. The detrended correspondence analysis revealed that nematode compositional changes from the river to the terrestrial adjacent area were clearer for the combined traits and nematode genera. Seven combined traits and 12 genera inhabited only the particular stations of the study site. The common nematodes were slender, 1-2 mm long, elongated filiform tails, non-selective deposit feeders, and very tolerant to pollutants, which lived in almost all stations (92.86%). The genus relative abundance (>10%) included Anoplostoma, Eubostrichus, and Chromadorina. The results suggest that distance from the river might regulate the habitability of nematodes, in which nematode functional traits play roles.
Co-Authors Agus Nuryanto ARDHINI RIN MAHARNING ERWIN RIYANTO ARDLI Sri Riani