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Metabolite Profiling and Molecular Docking of Candidate Fungal Postbiotics Derived from Rhizopus oligosporus Angga Prasetyo; Rasmiyana Rasmiyana
Jurnal Biologi Tropis Vol. 26 No. 4 (2026): in Progress
Publisher : Biology Education Study Program, Faculty of Teacher Training and Education, University of Mataram, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29303/jbt.v26i4.13040

Abstract

Fungal postbiotics have gained increasing attention as a source of bioactive metabolites with potential applications in food preservation. Previous studies have demonstrated that candidate fungal postbiotics produced by Rhizopus oligosporus cultivated on edamame husks (Glycine max L. Merrill) contain phenolic compounds and exhibit antioxidant activity. Building on these findings, this study aimed to characterize the metabolites present in candidate postbiotics and evaluate their antibacterial potential using molecular docking. Candidate postbiotics were produced by submerged fermentation and analyzed using gas chromatography-mass spectrometry (GC-MS). The major metabolites were docked to Staphylococcus aureus DNA gyrase subunit B (PDB ID: 4URM). GC-MS revealed a diverse metabolite profile dominated by 2,3-butanediol, followed by glycerin, dianhydromannitol, benzoic acid, and n-hexadecanoic acid. All selected metabolites exhibited negative predicted docking score, indicating thermodynamically favorable interactions with the target protein. Among them, n-hexadecanoic acid showed the strongest predicted binding affinity, followed by benzoic acid. These findings suggest that candidate fungal postbiotics derived from R. oligosporus-fermented edamame husks are promising natural bioactive ingredients for food biopreservation and active food packaging. Future molecular dynamics simulations and experimental validation are needed to confirm these computational predictions.  
MYCOGENIC NANOPARTICLE SYNTHESIS: EXPLORING ESSENTIAL COMPONENTS, OPTIMIZATION STRATEGIES, AND ADVANCED MULTI-SECTORAL INDUSTRIAL APPLICATIONS Angga Prasetyo; Rasmiyana Rasmiyana
JURNAL BIOSENSE Vol 9 No 4 (2026): Edisi Oktober 2026
Publisher : Universitas PGRI Banyuwangi, Jalan Ikan Tongkol No 01, Telp (0333) 421593, 428592 Banyuwangi 68416

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.36526/biosense.v9i4.9201

Abstract

Recent advances in nanobiotechnology have promoted the development of fungal-mediated nanoparticle synthesis as a sustainable alternative to conventional physical and chemical methods. This narrative review provides a comprehensive overview of fungi as biofactories for the synthesis of mycogenic nanoparticles, with emphasis on synthesis components, production conditions, and multi-sectoral application. A literature search was conducted using scientific databases to identify original open-access articles published between 2021 and 2026. After applying predefined inclusion and exclusion criteria, 30 studies were selected for qualitative analysis. Fungi provide an efficient platform for nanoparticle production because they secrete extracellular enzymes, proteins, polysaccharides, and secondary metabolites that function as natural reducing, capping, and stabilizing agents. The physicochemical properties of mycogenic nanoparticles are influenced by reaction parameters such as pH, temperature, precursor concentration, and cultivation conditions. The incorporation of natural biopolymers, including chitosan and carboxymethylcellulose, further improves nanoparticle stability and biological activity. Mycogenic nanoparticles have demonstrated broad potential in agriculture, food systems, environmental, and biomedicine through their antimicrobial, antifungal, antioxidant, anticancer, biofungicidal, wastewater treatment, and active food packaging application. However, several challenges remain, including limited knowledge of fungal synthesis mechanisms, large-scale production, and nanoparticle stability and biosafety. Future research should improve the understanding of fungal metabolism, optimize fermentation process, standardize synthesis methods, and evaluate safety through in vivo studies. Keywords: Fungi; Fungal-mediated synthesis; Mycogenic nanoparticle; Nanobiotechnology; Fungal biotechnology