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All Journal Journal of Tropical Life Science : International Journal of Theoretical, Experimental, and Applied Life Sciences
Pham, Minh Hong
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Agriculture, Biological Sciences & Forestry Environmental Science

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Genome-Wide Analysis of GATA Transcription Factor Family in Quinoa (Chenopodium quinoa): Identification, Characterization, and Expression Profiles: Genome Survey of the GATA Transcription Factor in Quinoa Le, Thi Man; La, Hong Viet; Chu, Ha Duc; Pham, Chau Thuy; Ha, Quyen Thi; Le, Thi Ngoc Quynh; Tran, Thi Thanh Huyen; Tran, Van Tien; Dong, Huy Gioi; Pham, Minh Hong; Tran, Vinh Thanh; Chu, Thi Bich Ngoc; Cao, Phi Bang
Journal of Tropical Life Science Vol. 14 No. 2 (2024)
Publisher : Journal of Tropical Life Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11594/jtls.14.02.02

Abstract

GATA-binding factor (GATA) proteins are the transcription factor (TF) family that are commonly involved in plant growth and development. The GATA TF family has been successfully identified and characterized for various higher plant species, but there is little research on the GATA TF family in quinoa (Chenopodium quinoa). In this present study, a total of 32 CqGATA genes were identified and analyzed in the quinoa genome. While the general features of the CqGATA TFs in quinoa were slightly variable, the majority of genes encoding the CqGATA TFs contained two and three exons. Our phylogenetic analysis demonstrated that the CqGATA TFs could be classified into four different groups. Gene expression analysis indicated that the expression profiles of the CqGATA genes varied in different tissues. Overall, our study could provide a reference for further functional characterization of the CqGATA genes in quinoa.
Genome-Wide Analysis of GATA Transcription Factor Family in Quinoa (Chenopodium quinoa): Identification, Characterization, and Expression Profiles: Genome Survey of the GATA Transcription Factor in Quinoa Le, Thi Man; La, Hong Viet; Chu, Ha Duc; Pham, Chau Thuy; Ha, Quyen Thi; Le, Thi Ngoc Quynh; Tran, Thi Thanh Huyen; Tran, Van Tien; Dong, Huy Gioi; Pham, Minh Hong; Tran, Vinh Thanh; Chu, Thi Bich Ngoc; Cao, Phi Bang
Journal of Tropical Life Science Vol. 14 No. 2 (2024)
Publisher : Journal of Tropical Life Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11594/jtls.14.02.02

Abstract

GATA-binding factor (GATA) proteins are the transcription factor (TF) family that are commonly involved in plant growth and development. The GATA TF family has been successfully identified and characterized for various higher plant species, but there is little research on the GATA TF family in quinoa (Chenopodium quinoa). In this present study, a total of 32 CqGATA genes were identified and analyzed in the quinoa genome. While the general features of the CqGATA TFs in quinoa were slightly variable, the majority of genes encoding the CqGATA TFs contained two and three exons. Our phylogenetic analysis demonstrated that the CqGATA TFs could be classified into four different groups. Gene expression analysis indicated that the expression profiles of the CqGATA genes varied in different tissues. Overall, our study could provide a reference for further functional characterization of the CqGATA genes in quinoa.
Co-Authors Cao, Phi Bang Chu, Ha Duc Chu, Thi Bich Ngoc Dong, Huy Gioi Ha, Quyen Thi La, Hong Viet Le, Thi Man Le, Thi Ngoc Quynh Pham, Chau Thuy Tran, Thi Thanh Huyen Tran, Van Tien Tran, Vinh Thanh