Indonesian Journal of Chemistry
Vol 20, No 5 (2020)

Synthesis, Characterization and Docking Study of Novel Pyrimidine Derivatives as Anticancer Agents

Manal Mohamed Talaat El-Saidi (Photochemistry Department, Chemical Research Division, National Research Center, Dokki, Giza, 12622, Egypt)
Ahmed Ali El-Sayed (Photochemistry Department, Chemical Research Division, National Research Center, Dokki, Giza, 12622, Egypt)
Erik Bjerregaard Pedersen (Department of Physics, Chemistry, and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark)
Mohamed Abdelhamid Tantawy (Hormones Department, Medical Research Division, National Research Center, Dokki, Giza, 12622, Egypt)
Nadia Ragab Mohamed (Photochemistry Department, Chemical Research Division, National Research Center, Dokki, Giza, 12622, Egypt)
Wafaa Ahmed Gad (Photochemistry Department, Chemical Research Division, National Research Center, Dokki, Giza, 12622, Egypt)



Article Info

Publish Date
18 Jul 2020

Abstract

New compounds 5 and 9 using DNA bases e.g. Adenine 1 and Guanine 6 derivatives have been synthesized. The use of simple methods to synthesize compounds 5 and 9 were done using pyrimidine as an alternative DNA base ring. Another design to synthesize new simple pyrimidine rings utilizing thiourea and ethylcyano acetate to afford 6-amino-2-thiouracil was adopted. The reaction of thiouracil 10 with chloro cyano or chloro ester and ketone, resulted in the formation of adduct compounds 18-21, rather than the formation of compound 17. All the synthesized compounds were subjected to docking study, in order to gain insights into their binding modes against cyclin-dependent protein kinase 2 (CDK-2) that is involved heavily in cell cycle regulation and receptor protein B-cell lymphoma 2 (BCL-2) which is involved in cell apoptosis. These targets were selected based on their key roles in cancer progression via the regulation of the cell cycle and DNA replication. Molecular-docking analyses showed that compound 14e was the best docked ligand against both targets, as it displayed the lowest binding energy, critical hydrogen bonds and hydrophobic interactions with the targets.

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Journal Info

Abbrev

ijc

Publisher

Subject

Chemical Engineering, Chemistry & Bioengineering Chemistry

Description

Indonesian Journal of Chemistry is an International, peer-reviewed, open access journal that publishes original research articles, review articles, as well as short communication in all areas of chemistry including applied chemistry. The journal is accredited by The Ministry of Research, Technology ...