HAYATI Journal of Biosciences
Vol. 29 No. 4 (2022): July 2022

Genetic Background of β-Lactamase Genes in Extraintestinal Pathogenic Escherichia coli ST131 in Indonesia Based on Whole-Genome Sequencing (WGS) Sequences

Noor Andryan Ilsan (Department of Medical Laboratory Technology, STIKes Mitra Keluarga, Margahayu, Bekasi, Indonesia)
Sipriyadi Sipriyadi (2Department of Biology, Faculty of Mathematics and Natural Science, University of Bengkulu, Kandang Limun, Bengkulu, Indonesia. 3Department of Magister Biology, Faculty of Mathematics and Natural Science, University of Bengkulu, Kandang Limun, Bengku)
Melda Yunita (Department of Medical Education, Faculty of Medicine, Universitas Pattimura, Ambon, Maluku, Indonesia)
Siti Nurfajriah (Department of Medical Laboratory Technology, STIKes Mitra Keluarga, Margahayu, Bekasi, Indonesia)
Maulin Inggraini (Department of Medical Laboratory Technology, STIKes Mitra Keluarga, Margahayu, Bekasi, Indonesia)



Article Info

Publish Date
27 Apr 2022

Abstract

Extraintestinal pathogenic Escherichia coli (ExPEC) is a group of pathogens that can colonize the outside of the intestine, such as the kidney, urinary tract, or bloodstream. This study analyzed more about the genetic background of β-lactamase genes among Indonesian ExPEC ST131. Whole-genome sequencing (WGS) sequences from the National Center for Biotechnology Information (NCBI) of Indonesian ExPEC ST131 were taken, then analyzed. Circular genomic mapping and genomic comparison of surrounding genes of β-lactamase in these isolates were generated. blaOXA-1 and blaDHA-1 were analyzed deeply due to their presence in a relatively long contig, making them available for analysis. Indonesian ExPEC ST131 isolates had blaOXA-1 with an identical genetic background of E. coli originating from China and Austria with aac (6’)-1b-cr5 in the downstream and cab83 in the upstream. The blaOXA-1 was also detected in other species, including Klebsiella pneumoniae INF142 originating from Australia and Salmonella enterica S146 from China. While, blaDHA-1 in EC_0406 had an identical genetic background to E. coli 142 and other species such as Shigella sonei FC1428 from India and S. flexneri M2901 from Australia, with Globulin-encoded gene in the upstream and lysR in the downstream. Our findings demonstrate the global spread of β-lactamase genes detected in Indonesian ExPEC ST131. These genes were identical to those isolated from some countries around the world.

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Journal Info

Abbrev

hayati

Publisher

Subject

Agriculture, Biological Sciences & Forestry Earth & Planetary Sciences

Description

HAYATI Journal of Biosciences (HAYATI J Biosci) publishes articles and short communication in tropical bioscience fields such as development, biotechnology, biodiversity and environmental issues. HAYATI J Biosci covers wide range of all life forms topics including virus, microbes, fungi, plants, ...