Natural Science: Jurnal Penelitian Bidang IPA dan Pendidikan IPA
Vol 9, No 1 (2023)

Molecular Docking Approach Of Brewed Coffee Compounds As Neuroprotective Agent

Dewi Ratih Tirto Sari (Program Studi Farmasi, Fakultas Ilmu Kesehatan, Universitas Ibrahimy)
Reni Ustiatik (Departemen Ilmu Tanah, Fakultas Pertanian, Universitas Brawijaya)
Siti Zamilatul Azkiyah (Program Studi Farmasi, Fakultas Ilmu Kesehatan, Universitas Ibrahimy)



Article Info

Publish Date
28 Mar 2023

Abstract

Coffee is the most popular beverage in the community and the main export commodity in Indonesia. coffee has a special flavor due to roasting and brewing techniques. This study identified the potential neuroprotective effect of eight compounds in brewed coffee through acetylcholinesterase inhibition by molecular docking. Molecular docking approach was conducted in this study. Eight compounds involved 2-Ethyl- 3,5 – dimethylpyrazine, Guaiacol, 2-Isobutyl-3- methoxypyrazine, 2- Methylpropanal, 3-Methyl – 2 – butene – 1 - thiol, 3- Methylbutanal, Furaneol, and 2 – Furfurylthiol were retrieved their structure from PubChem NCBI database and redocked with acetylcholinesterase by Molegro virtual docker version 5.0. then, the docking results were visualized and analyzed by PyMol 2.3 and Discovery Studio version 21.1.1. the docking studies performed that eight brewed coffee compound showed interaction with acetylcholinesterase at the protein gate and active sites. Even the interaction was not found in catalytic triad, the interaction of ligands – protein change the conformation and prevent the breaking down of acetylcholine to acetic acid and choline. This study suggested that eight brewed coffee compounds potentially as neuroprotective effect trough blocking acetylcholinesterase protein.

Copyrights © 2023






Journal Info

Abbrev

naturalscience

Publisher

Subject

Chemistry Earth & Planetary Sciences Education Physics Other

Description

Jurnal Natural Science ini memuat artikel yang membahas aspek pendidikan Fisika, metode, model pembelajaran IPA Fisika, inovasi-inovasi pembelajaran, perangkat pembelajaran, dan aspek fisika murni. Tim redaksi menerima artikel ilmiah dari hasil penelitian, laporan studikasus, kajian dan tinjauan ...