Indonesian Journal of Biotechnology
Vol 30, No 2 (2025)

Optimization of methanol‐induced expression and His‐tag purification of Saccharomycopsis fibuligera R64 mutant α‐amylase in Pichia pastoris

Clara Claudia (Department of Biotechnology Pharmacy, Indonesian School of Pharmacy, Bandung, 40266, West Java, Indonesia)
Elsa Destiana (Department of Biotechnology Pharmacy, Indonesian School of Pharmacy, Bandung, 40266, West Java, Indonesia)
Rista Awalia (Department of Biotechnology Pharmacy, Indonesian School of Pharmacy, Bandung, 40266, West Java, Indonesia)
Mia Tria Novianti (Research Center for Molecular Biotechnology and Bioinformatics, Jl. Singaperbangsa No. 2, Bandung 40133, West Java, Indonesia)
Taufik Ramdani Tohari (Research Center for Molecular Biotechnology and Bioinformatics, Jl. Singaperbangsa No. 2, Bandung 40133, West Java, Indonesia)
Dewi Astriany (Department of Pharmacochemistry, Indonesian School of Pharmacy, Bandung, 40266, West Java, Indonesia)
Shinta Kusumawardani (Research Center for Molecular Biotechnology and Bioinformatics, Jl. Singaperbangsa No. 2, Bandung 40133, West Java, Indonesia)
Muhammad Yusuf (Research Center for Molecular Biotechnology and Bioinformatics, Jl. Singaperbangsa No. 2, Bandung 40133, West Java, Indonesia
Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Sumedang, 45363, West Java, )

Umi Baroroh (Department of Biotechnology Pharmacy, Indonesian School of Pharmacy, Bandung, 40266, West Java, Indonesia)



Article Info

Publish Date
30 Jun 2025

Abstract

The Sfamy R64 α‐amylase mutant from Saccharomycopsis fibuligera was expressed in Pichia pastoris to explore its industrial potential. The gene encoding the mutant enzyme was cloned into the pPICZαA vector and transformed into P. pastoris SMD1168. Optimal expression was achieved at 1.5% methanol concentration, with the highest enzyme activity observed at 48 h, reaching 24.06 U/mL. The recombinant protein was purified using Ni‐Sepharose affinity chromatography in native and denaturing conditions. The native conditions retained higher protein integrity and activity, while the denaturing process resulted in partial degradation. Molecular dynamics (MD) simulations conducted to assess the structural stability of the His‐tagged Sfamy R64 α‐amylase mutant and its interaction with the maltose substrate. The simulation confirmed the stable binding of maltose in the active site and the solvent accessibility of the His‐tag, supporting its effectiveness in affinity chromatography. The RMSD, RMSF, and time‐evolution snapshots demonstrated that the protein remained structurally stable over 100 ns at an optimum temperature of 50 °C. The findings suggest that the Sfamy R64 mutant α‐amylase is a promising candidate for industrial applications, combining high expression yields, efficient purification, and stable enzyme‐substrate interactions. The results offer a strong basis for further optimization and large‐scale enzyme production.

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Journal Info

Abbrev

ijbiotech

Publisher

Subject

Biochemistry, Genetics & Molecular Biology Immunology & microbiology Materials Science & Nanotechnology

Description

The Indonesian Journal of Biotechnology (IJBiotech) is an open access, peer-reviewed, multidisciplinary journal dedicated to the publication of novel research in all aspects of biotechnology, with particular attention paid to the exploration and development of natural products derived from ...