Sriwijaya Journal of Forensic and Medicolegal
Vol. 3 No. 1 (2025): Sriwijaya Journal of Forensic and Medicolegal

Reading the Epigenetic Clock: A Comparative Analysis of DNA Methylation Markers for Age Estimation in Semen, Saliva, and Touch DNA

Febria Suryani (Department of Health Sciences, Emerald Medical Center, Jakarta, Indonesia)
Bryan Helsey (Department of Biomolecular Science and Translational Medicine, Quezon Medical Center, Quezon, Philippines)
Leonardo Simanjuntak (Department of Obstetrics and Gynecology, CMHC Research Center, Palembang, Indonesia)
Karina Chandra (Department of Anesthesiology and Intensive Care, CMHC Research Center, Palembang, Indonesia)
Mustafa Mahmud (Department of Thoracic Surgery, CMHC Research Center, Palembang, Indonesia)
Lisha Sandrina (Department of Optometry, CMHC Research Center, Palembang, Indonesia)
Ahmad Erza (Department of Criminal Law, Enigma Institute, Palembang, Indonesia)



Article Info

Publish Date
24 Jul 2025

Abstract

Background. Predicting an individual's age from biological evidence is a significant advance in forensic intelligence. DNA methylation, a stable epigenetic mark, provides the molecular basis for epigenetic clocks, but their operational reliability requires validation across diverse sample types and populations, particularly for low-template touch DNA. Objective. To develop and validate body-fluid-specific age prediction models from a curated five-CpG panel in semen, saliva and touch DNA, and to compare their accuracy in an Indonesian population. Methods. Following approval from the Ethical Committee of CMHC Indonesia (No. 128/EC/CMHC/2023), 150 healthy Indonesian male volunteers aged 18–65 provided semen, saliva and high-yield standardized touch DNA. Methylation at five CpG sites (ELOVL2, FHL2, TRIM59, KCNQ1DN, C1orf132) was quantified by controlled pyrosequencing after bisulfite conversion with efficiency controls. Body-fluid-specific models were built by multiple linear regression and validated by 10-fold cross-validation. Results. The semen and saliva models were highly accurate, with mean absolute deviations of 3.19 years (R²=0.94) and 3.55 years (R²=0.92). The touch DNA model was less precise but still informative (MAD 5.49 years, R²=0.85). All models satisfied the assumptions of linear regression, with variance inflation factors below 2.5, and 95% prediction intervals were narrowest for semen. Conclusion. The panel is validated for age prediction in a Southeast Asian population. The semen and saliva models are accurate enough for consideration in casework, while the touch DNA model, interpreted cautiously, can generate investigative leads from trace evidence. The findings underline the importance of tissue-specific modeling and provide a methodological blueprint for responsible forensic age estimation.

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Journal Info

Abbrev

SJFM

Publisher

Subject

Biochemistry, Genetics & Molecular Biology Health Professions Immunology & microbiology Law, Crime, Criminology & Criminal Justice Medicine & Pharmacology

Description

Focus Sriwijaya Journal of Forensic and Medicolegal (SJFM) focused on the development of medical sciences especially forensic and medicolegal for human well-being. Scope Sriwijaya Journal of Forensic and Medicolegal (SJFM) publishes articles which encompass all aspects of basic research/clinical ...