Biodiversitas Journal of Biological Diversity
Vol. 23 No. 4 (2022)

DNA barcoding of freshwater fish in Siberut Island, Mentawai Archipelago, Indonesia

Dewi Roesma (Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Andalas. Jl. Raya Unand, Limau Manih, Padang, 25163, West Sumatra, Indonesia)
DJONG HON TJONG (Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Andalas. Jl. Raya Unand, Limau Manih, Padang, 25163, West Sumatra, Indonesia)
Muhammad Janra (Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Andalas. Jl. Raya Unand, Limau Manih, Padang, 25163, West Sumatra, Indonesia)
Dyta Aidil (Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Andalas. Jl. Raya Unand, Limau Manih, Padang, 25163, West Sumatra, Indonesia)



Article Info

Publish Date
13 Apr 2022

Abstract

Abstract. Roesma DI, Tjong DH, Janra MN, Aidil DR. 2022. DNA barcoding of freshwater fish in Siberut Island, Mentawai Archipelago, Indonesia. Biodiversitas 23: 1795-1806. Information regarding molecular data of freshwater fish in Siberut Island, Mentawai Archipelago, Indonesia, is not available. This study was conducted to provide DNA barcodes of freshwater fish in Siberut island. The cytochrome oxidase subunit 1 (COI) gene was chosen to make DNA barcodes because it has been used as a tool capable of identifying organisms up to the species level. Specimens were collected directly captured in the three rivers from Siberut Island. A total of 40 individuals were selected from 200 individuals that have been identified morphologically and strengthened by the results of the molecular marker (DNA barcodes) consisting of 13 species, namely Gobiopterus cf. brachypterus (BOLD: ADF5945), Eleotris fusca (BOLD: AAF0108), Butis cf. butis (BOLD: AAL8960), Stiphodon semoni (BOLD: ACQ3312), Giuris margaritacea (BOLD: ACP9929), Anabas testudineus (BOLD: AAO2846), Rasbora jacobsoni, Rasbora vulcanus, Barbodes banksi, Redigobius cf. bikolanus, Periophthalmus argentilineatus, Hypseleotris cf. compressa, and Oryzias cf. javanicus (in a queue in the BOLD system). The average Kimura two-Parameter model (K2P) genetic distances within species, genera, families, and orders were 0.16%, 11.4%, 23.2%, and 26.0%, respectively. The interspecific K2P distance was higher than the intraspecific distance. The present study supports that COI Barcodes effectively identify fish up to the species level. Future research is needed, especially to species that may have potential as new species. In contrast, DNA barcodes as genetic information will contribute as the basic data to future studies in the monitoring, conservation, and management of freshwater fish in Siberut Island, Mentawai Islands. Therefore, the creation of DNA barcodes is immediately carried out.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...