Biodiversitas Journal of Biological Diversity
Vol. 24 No. 9 (2023)

Characterization and molecular identification of bacteria from mackerel bekasam in Sorong City, Southwest Papua Province, Indonesia

SUKMAWATI SUKMAWATI (Department of Fishery Product Processing, Faculty of Fisheries, Universitas Muhammadiyah Sorong. Jl. Pendidikan 27, Sorong 98412, Southwest Papua, Indonesia)
RATNA RATNA (Department of Water Resources Management, Faculty of Fisheries, Universitas Muhammadiyah Sorong. Jl. Pendidikan 27, Sorong 98412, Southwest Papua, Indonesia)
SIPRIYADI SIPRIYADI (Department of Biology, Faculty of Mathematics and Natural Science, Universitas Bengkulu. Jl. WR. Supratman, Bengkulu 38372, Bengkulu, Indonesia)
MELDA YUNITA (Department of Medical Education, Faculty of Medicine, Universitas Pattimura. Jl. Ir. M. Putuhena, Ambon 97233, Maluku, Indonesia)



Article Info

Publish Date
06 Oct 2023

Abstract

Abstract. Sukmawati S, Ratna R, Sipriyadi, Yunita M. 2023. Characterization and molecular identification of bacteria from mackerel bekasam in Sorong City, Southwest Papua Province, Indonesia. Biodiversitas 24: 4967-4977. Bekasam is traditional food type produced by traditional fermented fish. Microbes that grow through fermentation play an important role in forming the product’s aroma, texture, and overall quality. The study aimed to determine the biochemical characteristic of bacteria from mackerel (Scomberomorus sp.) bekasam in Sorong City and identify bacteria at the molecular level. This research was a descriptive study, which described the results of the characterization of bacteria from fermented mackerel fish and the results of molecular identification to the species level through the PCR (Polymerase Chain Reaction) technique. Then, the DNA sequences were further analyzed using the agarose gel electrophoretic separation method to visualize the bacterial DNA profile. The biochemical characterization of bacterial isolates from mackerel showed that all isolates were negative indole, and eight isolates were positive in reducing nitrate. In comparison, four isolates were negative in reducing nitrate, then all isolates had proteolytic activity except the FST 3.1 and FST 3.2 isolates. Eleven isolates were positive in hydrolyzing fat, and one isolate could not hydrolyze fat. According to the DNA patterns seen in electrophoresis and alignment of the 16 sRNA gene sequences, several types of bacteria had been identified as Bacillus paramycoides strain 2883 FST 1.1, Bacillus paramycoides strain 3665 FST 2.1, Bacillus mobilis strain ICA-144 FST 3.1, Bacillus cereus strain ATCC 14579 FNT 1.1, Bacillus mobilis strain ICA-144 FNT 2.1, and Bacillus cereus strain ATCC 14579 FNT 3.1.

Copyrights © 2023






Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...