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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 8 Documents
 1 
Search results for , issue "vol. 13 no. 2 (2012)" : 8 Documents clear
The conservation of mitochondrial genome sequence in Leucadendron (Proteaceae) MADE PHARMAWATI; GUIJUN YAN; PATRICK M. FINNEGAN
Biodiversitas Journal of Biological Diversity Vol. 13 No. 2 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130201

Abstract

Pharmawati M, Yan G, Finnegan PM. 2012. The conservation of mitochondrial genome sequence in Leucadendron (Proteaceae). Biodiversitas 13: 53-58. Mitochondrial DNA (mtDNA) is useful for developing molecular markers and for studying plant phylogeny.However, its usefulness depends on the degree of detectable sequence variation. In seven species of the genus Leucadendron, PCRRFLP failed to reveal any polymorphisms in seven separate regions of the mtDNA. Sixty-two primer pair - enzyme combinations were used to assay at least 248 restriction sites, resulting in the direct sampling of a minimum of 992 bp across 17,500 bp of mt DNA. The highly conserved nature of the mtDNA sequence in the genus Leucadendron was confirmed by the absence of sequence variation in the 1434 bp mtDNA nad1/B-C intron across these species. Mitochondrial DNA sequences are more highly conserved than the chloroplastDNA sequences in Leucadendron and the mtDNA sequences in many other plant genera. Phylogenetic analysis using this intronsequence was consistent with other phylogenetic analyses in regard to the position of Proteaceae.
Isolation and phylogenetic relationship of orchid-mycorrhiza from Spathoglottis plicata of Papua using mitochondrial ribosomal large subunit (mt-Ls) DNA SUPENI SUFAATI; VERENA AGUSTINI; SUHARNO SUHARNO
Biodiversitas Journal of Biological Diversity Vol. 13 No. 2 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130202

Abstract

Sufaati S, Agustini V, Suharno. 2012. Isolation and phylogenetic relationship of orchid-mycorrhiza from Spathoglottis plicata of Papua using mitochondrial ribosomal large subunit (mt-Ls) DNA. Biodiversitas 13: 59-64. All terrestrial mycorrhiza have mutual symbiotic with mycorrhizal fungi in order to gain nutrient from surrounding environment. This study was done to isolate and to identify mycorrhiza orchid that associates with Spathoglottis plicata and were collected from Cagar Alam Pegunungan Cycloops (CAPC), Jayapura. Isolation of mycorrhizal orchid came after the modified method of Manoch and Lohsomboon (1992). The result showed that based on the morphological characteristic, there were presumably 14 isolations. However, only 2 isolations have been known, namely Rhizoctonia sp. and Tulasnella sp., while the rest were not identified yet. Among them, the DNA of the 11 isolations were able to beextracted for further analysis. The constructed phylogenetic tree performed that those species could be grouped into 4 major clusters. Two species, Rhizoctonia sp. and Tulasnella sp. were in different clusters.
Diversity of macrofungal genus Russula and Amanita in Hirpora Wildlife Sanctuary, Southern Kashmir Himalayas SHAUKET AHMED PALA; ABDUL HAMID WANI; RIYAZ AHMAD MIR
Biodiversitas Journal of Biological Diversity Vol. 13 No. 2 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130203

Abstract

Pala SA, Wani AH, Mir RA. 2012. Diversity of macrofungal genus Russula and Amanita in Hirpora Wildlife Sanctuary, Southern Kashmir Himalayas. Biodiversitas 13: 65-71. The Hirpora Wildlife Sanctuary that extends over an area of 114 km2 lies in the Pir Panjal range at a distance of 70 km in south-west of summer capital Srinagar. It is rich in biodiversity including macrofungal diversity. The Sanctuary has been subjected to high ecological and anthropogenic disturbance due to the construction of Mughal road which is major threat for its biodiversity. Since there is hardly any report of documentation of macrofungi from this sanctuary. In this back drop a survey was carried out during the year 2010 and 2011 to explore and invetorise macrofungal diversity of the sanctuary. During thesurvey a no of macrofungi were documented, among which Amanita and Russula were dominant genus represented by 7 species each. All the 14 species viz. Amanita ceciliae (Berk. & Broome) Bas. Amanita flavoconia G.F. Atk., Amanita muscaria var. formosa Pers., Amanita pantherina (Fr.) Krombh., Amanita phalloides (Fr.) Link., Amanita vaginata (Bull. ex Fr.) Vitt., Amanita virosa (Fr.) Bertillon, Russula aeruginea Fr., Russula atropurpurea (Krombh.) Britz., Russula aurea Pers., Russula cyanoxantha (Schaeff.) Fr., Russula delica Fr. Russula emetica (Schaeff. ex Fr.) Gray. and Russula nobilis Velen. are ectomycorrhizal in nature and among them Russula aeruginea Fr. is reported first time from the Kashmir.
Effect of plantations on plant species diversity in the Darabkola, Mazandaran Province, North of Iran HASSAN POURBABAEI; FATEMEH ASGARI; ALBERT REIF; ROYA ABEDI
Biodiversitas Journal of Biological Diversity Vol. 13 No. 2 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130204

Abstract

Pourbabaei H, Asgari F, Reif A, Abedi R. 2012. Effect of plantations on plant species diversity in the Darabkola, Mazandaran Province, North of Iran. Biodiversitas 13: 72-78. In this study, the effect of plantations on plant species diversity was investigated in Darabkola, Mazandaran province, north of Iran. To conduct the study, a natural mixed forest, a broad–leaved plantation (Alnus subcordata-Acer velutinum) and a coniferous plantation (Cupressus sempervirens var. horizontalis-Pinus brutia) were selected. 35 sampling plots weretaken in systematic random method in each area. Data analysis was carried out using Simpson, Hill's N2, Shannon-Wiener and Mc Arthur's N1 diversity indices, Smith and Wilson evenness index and species richness. Results revealed that there were 32 plant species in natural forest and 30 plant species were found in each plantation. Rosaceae and Lamiaceae were the main families in the studied areas. Diversity and evenness indices of all vegetation layers had the most values in the natural forest. Richness of woody plants had the highest value in the natural forest, while herbaceous richness was the highest in coniferous plantation. Mc Arthur's N1 had the highest value among diversity indices and followed by Hill's N2, Shannon-Wiener and Simpson indices, respectively. In addition, results showed thatthere were significant differences among diversity, evenness and richness indices in all vegetation layers in the three studied areas.
The wild plants used as traditional medicines by indigenous people of Manokwari, West Papua OBED  LENSE
Biodiversitas Journal of Biological Diversity Vol. 13 No. 2 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130208

Abstract

Lense O. 2012. The wild plants used as traditional medicines by indigenous people of Manokwari, West Papua. Biodiversitas 13: 98- 106. The aims of the research were to identify the main plant species which are used as traditional medicines by native people in Manokwari District, West Papua Province and also to describe the method of preparation and uses of some of the medicinal plants. This research was conducted in seven sub-districts, ie. Manokwari, Ransiki, Kebar, Wasior, Mimyambouw, Merdey and Anggi-Sururey sub- District. Information recorded including methods of diagnosis and treatment of diseases, tribal name of a plant they used for treating disease (s), part of the plant used, preparation and mode of application, and whether the plant is used alone or in combination with other plants. Results indicate that the indigenous people in Manokwari District have been using at least 99 plant species (93 genera and 59 families) as sources of medicines. Most of these traditional medicinal plants are commonly gathered from the local tropical rainforest communities. At least 40 kinds of sickness and injuries such as malaria, fever, and wounds can be treated by using traditional medicinal plants from Manokwari District. Research also found that all parts of plants used, but leaf extracts are the most common part of the plant used for treating medical condition.
The population condition and availability of feed of cuscus in the Arfak Mountain Nature Reserve, West Papua ANTON SILAS SINERY; CHANDRADEWANA BOER; WARTIKA ROSA FARIDA
Biodiversitas Journal of Biological Diversity Vol. 13 No. 2 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130206

Abstract

Sinery AS, Boer C, Farida WR. 2012. The population condition and availability of feed of cuscus in the Arfak Mountain Nature Reserve, West Papua. Biodiversitas 13: 86-91. The cuscus is a pouched marsupial grouped in the Phalangeridae family, which is nocturnal, arboreal, herbivore, and in most cases the tail is prehensile. The animals are legally protected due to low reproduction, limited distribution area, and high rate of illegal hunting. The illegal hunting happened not only in the production forest areas but also in the reserve areas such as Nature Reserve of Arfak Mountain, directly or indirectly, affects the life quality of the ecosystem, mainly cuscuses population. Therefore, it is necessary to do efforts to have a better management of the region to ensure the sustenance of manycomponents in it. This research is aimed to know the population density of cuscus in Arfak Mountain Nature Reserve and carried out for two months. The method used was descriptive by using direct and indirect observation. The result shows that cuscuses existing in the Arfak Mountain conservation area were northern common cuscus (Phalanger orientalis), ground cuscus (Phalanger gymnotis) and common spotted cuscus (Spilocuscus maculatus). The biggest individual number is of P. orientalis with 39 individuals consisting of 18 males and 21 females, the second is of P. gymnotis with 10 individuals consisting of 4 males and 6 females, and the smallest is of S. maculatus with 9 individuals consisting of 4 males and 5 females. From the total of 58 cuscuses, there are 38 adult and 20 young cuscuses. There are 20 forest plant species identified as feed resources of cuscus in Arfak Mountain Nature Reserve. The parts of forest plant consumed by cuscus are fruits and young leaves. P. gymnotis also consumes small insects such as grasshopper. The cuscuses spread from lowland forest to highland forest (2,900 m asl.)
Determination of long-tailed macaque's (Macaca fascicularis) harvesting quotas based on demographic parameters YANTO SANTOSA; KUSMARDIASTUTI KUSMARDIASTUTI; AGUS PRIYONO KARTONO; DEDE AULIA RAHMAN
Biodiversitas Journal of Biological Diversity Vol. 13 No. 2 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130205

Abstract

Santosa Y, Kusmardiastuti, Kartono AP, Rahman DA. 2012. Determination of long-tailed macaque's (Macaca fascicularis) harvesting quotas based on demographic parameters. Biodiversitas 13: 79-85. Harvesting quota of long-tailed macaques for breeding purpose should be set up based on demographic parameters. The objectives of this research were to determine demographic parameters affecting the set up of harvesting quota and the sustainable harvesting quotas of long-tailed macaque in Indonesia. This study was expected to provide useful information for consideration of setting up harvesting quotas for long-tailed macaque in Indonesia. This study was conducted in November 2009-Januari 2010 using the equation of Q = Nt-MVP. The results showed varied harvesting quotas for different age classes of long-tailed macaque with an average number of 5 for infant males, 3 for infant females, 5 for juvenile males, 4 for juvenile females, 6 for sub-adult males, 8 for sub-adult females and 2 for adult males. The dominant variable determining quota was survival rate.
Vegetation stands structure and aboveground biomass after the shifting cultivation practices of Karo People in Leuser Ecosystem, North Sumatra T. ALIEF ATHTHORICK; DEDE SETIADI; YOHANES PURWANTO; EDI GUHARDJA
Biodiversitas Journal of Biological Diversity Vol. 13 No. 2 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130207

Abstract

Aththorick TA, Setiadi D, Purwanto Y, Guhardja E. 2012. Vegetation stands structure and aboveground biomass after the shifting cultivation practices of Karo People in Leuser Ecosystem, North Sumatra. Biodiversitas 13: 92-97. Vegetation stands structure and aboveground biomass after the shifting cultivation practices of Karo People in Leuser Ecosystem, North Sumatra. Shifting cultivation has been practiced by Karo People in Leuser Ecosystem for a very long time and caused a mosaic of patches that shift over time between traditional agriculture and secondary forest. The objectives of this study were to investigate the recovery of vegetation stands structure and aboveground biomass in four age classes of secondary forest, i.e. 5-years old, 10-years old, 20-years old, 30-years old andprimary forest as a control. In total, 496 subplots were surveyed. Saplings contributed 62.82% of basal area in 5-years forest and still important in 10 and 20-years forest, but density decreased in 30-years and primer forest whereas tree stands dominated in 30-years and primary forest and shared basal area of 96.36% and 97.03%, respectively. Aboveground biomass of trees achieved its highest values in primary forest, i.e. 659.22 t/ha and contributed to total aboveground biomass of 99.38%.

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