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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 16 Documents
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Search results for , issue "vol. 15 no. 1 (2014)" : 16 Documents clear
Growth hormone genotyping by MspI restriction enzyme and PCRRFLP method in Aceh cattle breed at Indrapuri District, Aceh Province, Indonesia WIDYA PINTAKA BAYU PUTRA; TETY HARTATIK; SUMADI SUMADI
Biodiversitas Journal of Biological Diversity Vol. 15 No. 1 (2014)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d150101

Abstract

Putra WPB, Hartatik T, Sumadi. 2014. Growth hormone genotyping by MspI restriction enzyme and PCR-RFLP method in Aceh cattle breed at Indrapuri District, Aceh Province, Indonesia. Biodiversitas 15: 1-5. The objective of this research was to identify growth hormone (GH) gene in Aceh cattle at Indrapuri’s Breeding and Forage Centre (IBFC) of Aceh Cattle. Forty one cattle consisting of 21 male and 20 female cattle were used in this study. Polymerase Chain Reaction (PCR) - Restriction Fragment Length Polymorphism (RFLP) and sequencing method was used to detect MspI site on GH gene. Based on the sequencing, it can be concluded that all cattle were monomorphic. The frequency of TT genotype and T allele were 1.00 relatively. The transition of C (cytosine) into T (thymine) on 1549 position caused the lost of restriction site. The insertion of T and G (guanine) on 1542 and 1552 position caused the length of GH gene were 329 bp in Aceh cattle.
Endophytic fungi associated with endogenous Boswellia sacra SAIFELDIN A.F. EL-NAGERABI; ABDULKADIR E. ELSHAFIE; SOLEIMAN S. ALKHANJARI
Biodiversitas Journal of Biological Diversity Vol. 15 No. 1 (2014)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d150104

Abstract

El-Nagerabi SAF, Elshafie AE, AlKhanjari SS. 2014. Endophytic fungi associated with endogenous Boswellia sacra. Biodiversitas 15: 24-30. Endophytic fungi associated with leaves and stem tissues of Boswellia sacra growing in Dhofar Mountains of Oman were investigated from May 2008 through October 2011. The biological diversity, tissue-preference and seasonal variations of fungi were evaluated. Forty-three species and 3 varieties of fungi were recovered as new records from this plant. Of these isolates, 35 species are new reports to the mycoflora of Oman, whereas 12 species were added to the list of fungal flora of the Arabian Peninsula. The genus Alternaria (12 species) is the most prevalent genus recovered from 12.5-83.3% of the screened leaves and stem samples, followed by Aspergillus (5 species, 3 varieties, 6.9-86.1%), Mycelia sterilia (76.4%), Rhizopus stolonifer (62.5%), Drechslera (3 species, 40.3- 54.2%), Cladosporium (3 species, 20.8-52.8%), Curvularia lunata (38.8%), Chaetomium (2 species, 15.3-26.3%), Penicillium spp. (9.8- 27.8%), Fusarium (9 species, 6.9-27.8%), Ulocladium consortiale (27.8%), Mucor hiemalis (19.5%), and the remaining species (Scytalidium thermophilum, Phoma solani, Taeniolella exilis, and Botryodiplodia theobromae) exhibited very low levels of incidence (4.2-11.1%). Endophytic colonization of the leaf tissues was greater (43 species, 3 varieties) comparable to stem tissues (25 species).This indicates heterogeneity and tissue-preference, with no evidence of seasonal variation. Therefore, the isolation of many fungal species and sterile mycelia supports the biodiversity of the endophytic fungi invading B. sacra and the high possibility of isolating more fungal species using advanced molecular techniques
Four newly recorded species of Dryopteridaceae from Kashmir valley, India SHAKOOR AHMAD MIR; ANAND KUMAR MISHRA; ZAFAR AHMAD RESHI; MAHESHWAR PRASAD SHARMA
Biodiversitas Journal of Biological Diversity Vol. 15 No. 1 (2014)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d150102

Abstract

Mir SA, Mishra AK, Reshi ZA, Sharma MP. 2014. Four newly recorded species of Dryopteridaceae from Kashmir valley, India.Biodiversitas 15: 6-11. Habitat diversity, elevation, cloud cover, rainfall, seasonal and temperature variations have created many ideal sites for the luxuriant growth of pteridophytes in the Kashmir valley, yet all the regions of the valley have not been surveyed. In Kashmir valley the family Dryopteridaceae is represented by 31 species. During the recent extensive field surveys of Shopian district four more species viz., Dryopteris caroli-hopei Fraser-Jenkins, Dryopteris blanfordii subsp. nigrosquamosa (Ching) Fraser-Jenkins, Dryopteris pulvinulifera (Bedd.) Kuntze and Polystichum nepalense (Spreng) C. Chr. have been recorded for the first time from the valley. The taxonomic description, synonyms, distribution and photographs of each species are given in this article.Key words: Dryopteris, Kashmir valley, Shopian, pteridophytes, new records
A comparative study on plant diversity in alder (Alnus subcordata) stands of natural and plantation areas SEYED ALIAKBAR REZAEI TALESHI
Biodiversitas Journal of Biological Diversity Vol. 15 No. 1 (2014)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d150106

Abstract

ezaei-Taleshi SA. 2014. A comparative study on plant diversity in alder (Alnus subcordata) stands of natural and plantation areas. iodiversitas 15: 39-47. Diversity index is the useful criteria for evaluating sustainability of forest ecosystems. Current study carried out in Alder (Alnus subcordata C.A. Meyer) stands that located in north forests of Iran. The aim of the study is express the plant diversity indices and positive role of the trees both natural and plantation forms. Data of Alder trees and associated species were recorded in sample plots which lay down in study area randomly. The abundance, density, percentage of frequency of each species was calculated by standard methods. The results of analysis revealed that, 47 species (21 trees and shrubs species and 26 herbaceous species) were abundant in 80 sample plots both in natural and plantations Alder stands. Whilst the results showed that the number of species in natural area (44 species) was more than plantation stands (37 species). Comparison of species distribution in different physiographical situation showed that some species such as Alnus subcordata, Parrotia persica, Rubus hyrcanus and Prunus sp. recorded in spread rang of physiographic variables as elevation, slopes and aspects. The biodiversity criteria as Shannon H’ and Simpsons D and 1/D indexes showed that they were more in natural stands than plantation areas.
Distribution of mangrove species reported as rare in Andaman and Nicobar islands with their taxonomical notes PANDISAMY RAGAVAN; K. RAVICHANDRAN; R. S.C. JAYARAJ; P. M. MOHAN; ALOK SAXENA; S SARAVANAN; A. VIJAYARAGHAVAN
Biodiversitas Journal of Biological Diversity Vol. 15 No. 1 (2014)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d150103

Abstract

Ragavan P, Ravichandran K, Jayaraj RSC, Mohan PM, Saxena A, Saravanan S, Vijayaraghavan A. 2014. Distribution of mangrove species reported as rare in Andaman and Nicobar islands with their taxonomical notes. Biodiversitas 15: 12-23. During the recent field survey it was found that among 15 rare mangroves in Andaman and Nicobar Islands, ten rare species i.e. Acanthus ebracteatus, Acrostichum speciosum, Bruguiera cylindrica, Cynometra iripa, Cynometra ramiflora, Lumnitzera racemosa, Rhizophora hybrids, Sonneratia alba, Sonneratia griffithii and Xylocarpus mekongensis are present in Andaman and Nicobar islands. In addition to Acanthus volubilis, Brownlowia tersa and Sonneratia ovata are recorded after their first report.
How plant diversity features change across ecological species groups? A case study of a temperate deciduous forest in northern Iran FATEMEH BAZDID VAHDATI; SHAHRYAR SAEDI MEHRVARZ; ALIREZA NAQINEZHAD; HAMID GHOLIZADEH
Biodiversitas Journal of Biological Diversity Vol. 15 No. 1 (2014)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d150105

Abstract

Bazdid Vahdati F, Saeidi Mehrvarz Sh, Naqinezhad A, Gholizadeh H. 2014. How plant diversity features change across ecological species groups? A case study of a temperate deciduous forest in northern Iran. Biodiversitas 15: 31-38. Species diversity is one of the most important indices for evaluating the stability and productivity of forest ecosystems. The aim of this research was to recognize ecological species groups and to determine the relationship between environmental variables and the distribution of ecological species groups. For this purpose, 25 400-m 2 relevés were sampled using the Braun-Blanquet method. Vegetation was classified using modified Two-Way Indicator Species Analysis (TWINSPAN) and resulted in three ecological species groups. Different species diversity indices were applied to quantify diversity of these species groups. ANOVA and Duncan’s tests indicated that all species and environmental variables except altitude changed significantly across the species groups. The results also showed that the group located in the northern aspect and on low slopes had the highest diversity indices compared with groups located in dry aspects and on high slopes. In reality, abundant precipitation (northern aspect) and soil enrichment (low slopes) are principal factors that provide suitable conditions for plant growth and species diversity. Thus, the study of diversity changes in ecological species groups can result in an ecologically precise perspective for managing forest ecosystems.
Zelkova carpinifolia reservoir from Hyrcanian Forests, Northern Iran, a new sacrifice of Ophiostoma novo-ulmi AKRAM AHMADI; MOHAMMAD REZA KAVOSI; HASSAN SOLTANLOO
Biodiversitas Journal of Biological Diversity Vol. 15 No. 1 (2014)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d150107

Abstract

Ahmadi A, Kavosi MR, Soltanloo H. 2014. Zelkova carpinifolia reservoir from Hyrcanian Forests, Northern Iran, a new sacrifice of Ophiostoma novo-ulmi. Biodiversitas 15: 48-52. Zelkova carpinifolia belongs to the Ulmaceae. It is the only species from Zelkova genus that has been distributed and is native to Iranian forests. This tree species is one of the valuable species that is comprised of endangered plants. Nevertheless, the most of reservoirs of this species have been faced to problems that fungal disease is one of the important and lethal disturbance. This study was conducted to identify the main disturbance which has been resulted in Z. carpinifolia decadence in Daland forest reservoir, North of Iran. The study has ensured that O. novo-ulmi is the fungal pathogen in this forest reservoir. It can be reminded that this pathogen had been previously found in Ulmus genus which has been created devastating event in these noteworthy reservoirs. Some symptoms which were observed in field comprising flagging and wilting of leaves. Bark beetle galleries and occlusion of xylem vessels were the other evidence of fungal disease. In light of laboratory results, the fungi colony was fluffy, light-colored and fast-growing. The different shapes of fungi growth like white fibrous and flower shape or dark petaloid shape were observed. Mean colony diameters of O. novo-ulmi were 3.72 ±0.16 mm/day in the dark at 20 °C. Simultaneously, Microscopic analysis of sexual and asexual systems of O. novo-ulmi using a light microscope, a stereo microscope, and a scanning electron microscope revealed that it had morphological features of sporothix, pesotum, yeast-like and perithecium synanon morphology.
Structure and spatial pattern of land uses patches in the Zagros Mountains region in the west of Iran ARASH KARAMI; KIOMARS SEFIDI; JAHANGIR FEGHHI
Biodiversitas Journal of Biological Diversity Vol. 15 No. 1 (2014)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d150108

Abstract

Karami A, Sefidi K, Feghhi J. 2014. Structure and spatial pattern of land uses patches in the Zagros Mountains region in the west of Iran. Biodiversitas 15: 53-59. Landscape ecology as a new interdisciplinary science, concepts, theories and methods provides for evaluation and management of land. Quantification of landscape patterns has key role in the interpretation and modeling of spatial and chronically variation of land uses. This study carried out in the Zagros vegetative region in the west of Iran to quantify structure and spatial pattern of land uses and forest fragmentation in the Zagros Mountains region. The mosaic analysis method was used for quantifying landscape metrics. Totally 2783 land use patches were recorded in the study area. The most of the patches were agricultural area and the lowest number of patches recorded for rivers. Diversity indices analysis showed agricultural land use has highest diversity in comparing with other land uses. Rangeland use has distributed in the central region of the study area. Despite the high density agriculture and rangeland a lot of potentials there are two conversions this land as a sustainable ecosystem (forests, agriculture integrated, and rangelands), that can be by applying as an appropriate method in management and control policies and converting artificial land uses to the natural or semi natural land uses according to the advantages of such land uses in view of sustainability. We conclude that fragmentation of natural land uses such forest and rangelands should be reducing and maintain large patches of natural vegetation to sustainable land management in this region.
Conservation status and distribution pattern of the Indus River Dolphin in River Beas, India MOHD SHAHNAWAZ KHAN; ANJANA PANT
Biodiversitas Journal of Biological Diversity Vol. 15 No. 1 (2014)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d150111

Abstract

Khan MS, Pant A. 2014. Conservation status and distribution pattern of the Indus River Dolphin in River Beas, India. Biodiversitas 15: 75-79. Decline in the populations of Indus River Dolphins Platanista gangetica minor throughout its range of distribution and a perception that it is a 'keystone species' for riverine ecosystem stirred the idea of proposed study. Deficiency of baseline data on its distribution and ecology is a major constraint that this (only known sub-population in India) species’ conservation is facing in the country. Thus to ascertain its conservation status and distribution pattern, the study was conducted between December 2010 to June 2012. During the study, three schools of dolphins have been identified, one each along Beas bridge-Gagdewal; Baguwal-Dhunda and Karmowala-Harike that comprised of adult, sub-adult and calves. The occurrence dolphins was found attributed to preferred habitat features such as deep pools, slow water current, abundant prey base and low disturbance.
Reaction and fractal description of soil bio-indicator to human disturbance in lowland forests of Iran SAKINEH MOLLAEI DARABI,; YAHYA KOOCH; SEYED MOHSEN HOSSEINI
Biodiversitas Journal of Biological Diversity Vol. 15 No. 1 (2014)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d150109

Abstract

Mollaei-Darabi S, Kooch Y, Hosseini SM. 2014. Reaction and fractal description of soil bio-indicator to human disturbance in lowland forests of Iran. Biodiversitas 15: 60-66. Earthworms are expected to be good bio-indicators for forest site quality. The deforestation of land into another function could changes the soil features that could effect on earthworm population. This study was conducted to understand the changes of soil functions, resulting from exploitive management using some soil features and their fractal dimensions. Two sites were selected, consisting of an undisturbed forest site (DS) in lowland part of Khanikan forests located in Mazandaran province, north of Iran. Within each site 50 soil samples were obtained from 0-30cm depth along two sampling lines with 250 meter length for each. Deforestation brought a lower soil quality in the sites under the study. Decreasing silt, clay, moisture, pH, carbon to nitrogen ratio, available Ca, earthworm density and biomass, increasing bulk density and sand were few outcomes of the deforestation. Except for clay, the deforestation affect on fractal dimension of soil features. The fractal dimension of bulk density, silt, moisture, pH, earthworm density and biomass were decreased imposed by deforestation. Our results suggest that deforestation should be regarded as an effective factor on variability of soil features that are tied to forest ecology. This is significant for evaluating forest management policies and practices with respect to effects on soil and also for the use of soils as indicators, especially earthworms as bio-indicator, of forest ecosystems.

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