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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 48 Documents
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Search results for , issue "vol. 19 no. 5 (2018)" : 48 Documents clear
Conservation and selection of plus trees of Pongamia pinnata in Bali, Indonesia NI LUH ARPIWI; I GUSTI AYU SUGI WAHYUNI; I KETUT MUKSIN; SUTOMO SUTOMO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190502

Abstract

Arpiwi  NL, Wahyuni IGAS, Muksin IK, Sutomo. 2018. Conservation and selection of plus trees of Pongamia pinnata in Bali, Indonesia. Biodiversitas 19: 1607-1614. Pongamia pinnata (L.) Pierre or commonly known as pongamia is a tropical legume tree produces oil seeds for biodiesel feedstock. The aims of present study were mapping growth sites of pongamia in Bali,  counting the number of trees and selecting plus trees based on growth parameters such as total height, clear bole height, diameter at breast height, canopy width, and oil content. Method of plus tree selection was comparison tree where one candidate tree was compared with 5 nearby check trees from each village. A total of 126 pongamia trees were found in coastal beach of Bali. The majority of trees were in the north west of the island.  Temperature ranges from 26-28oC, humidity ranges from 74-80% and altitude 5-50 meters above sea level. Eight pongamia plus trees were selected from 4 villages namely Kalibukbuk, Pengulon, Pemogan, and Sanur. In conclusion, pongamia was mostly distributed in the northern-west part of the Bali Island of Buleleng District. Lower number of trees was also found in the southern and western part of the island. Trees either scattered or grown in small groups. The number of pongamia tree in Bali is small and this needs further action for conserving the species.
Sequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences BADRUL MUNIR MD-ZAIN; AQILAH ABDUL-AZIZ; NUR SYAFIKA MOHD-YUSUF; ROSLI NORSYAMIMI; JEFFRINE JAPNING ROVIE-RYAN; KAYAL VIZI KARUPPANNAN; NADIATUR AKMAR ZULKIFLI; SALMAH YAAKOP
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190501

Abstract

Md-Zain BM, Abdul-Aziz A, Aifat NR, Mohd-Yusof NS, Norsyamimi R, Rovie-Ryan JJ, Karuppannan KV, Zulkifli NA, Yaakop S. 2018. Sequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences. Biodiversitas 19: 1601-1606. Malayan gaur (Bos gaurus hubbacki) can only be found in Peninsular Malaysia and southern Thailand. The International Union for Conservation of Nature (IUCN) has listed Malayan gaur in the Red List as vulnerable. The main objective of this study was to investigate sequence variation in the mitochondrial D-loop region of B. g. hubbacki from two captive centers. We collected 30 DNA samples of Malayan gaur from Jenderak Selatan Wildlife Conservation Center in Pahang and the Sungkai Wildlife Reserve in Perak. Polymerase chain reactions were performed to amplify all the samples. DNA sequences were analyzed using Neighbor-Joining (NJ) and Maximum Parsimony (MP) methods. Based on the 652 base pairs obtained, we found only seven variable characters with a value of 1% and a genetic distance between the two captive centers of 0.001. Haplotype analyses using DnaSP software detected only four haplotypes between these two captive centers. Both NJ and MP trees portrayed all Malayan gaur individuals in Jenderak Selatan and Sungkai captive centers as belonging to the same clade. Genetic variation of Malayan gaur in these centers is considered low due to individuals possibly sharing the same common parent. This sequence variation information is of paramount importance for the proper breeding and conservation management program of Malayan gaur in the future.
Short Communication: Novel Single Nucleotide Polymorphisms (SNPs) in the 5'UTR of Bovine Heat Shock Protein 70 (bHSP70) Gene and its association with Service per Conception (S/C) of Pasundan cattle SYAHRUDDIN SAID; WIDYA PINTAKA BAYU PUTRA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190504

Abstract

Said S, Putra WPB. 2018. Short Communication: Novel Single Nucleotide Polymorphisms (SNPs) in the 5'UTR of Bovine Heat Shock Protein 70 (bHSP70) Gene and its association with Service per Conception (S/C) of Pasundan cattle. Biodiversitas 19: 1622-1625. Heat stress in the livestock reduces reproductive traits, including of service per conception (S/C). The influence of heat stress in livestock can be handled through molecular selection. One of the candidate genes that is affecting heat stress tolerance is Bovine Heat Shock Protein 70 (bHSP70) gene. This research was carried out to detect the single nucleotide polymorphism (SNPs) in the 5'UTR of bHSP70 gene from 44 heads of Pasundan cows at breeding station (BPPIBT-SP Ciamis, West Java). Research showed that 18 SNPs were detected with sequencing method. The insertion mutation was detected in all animal studied and occurred at position between g.1112 and g.1113. The moderate of polymorphic informative content (PIC) were detected in two SNPs of g.1117G/A and g.1125A/C. Preliminary analysis showed that haplotype of two homozygote genotype combination from both SNPs had better of S/C value of than the others (P<0.01). Moreover, the average of S/C value in heterozygote genotype seems higher than homozygote genotype. However, the further research for clarification of this research results through large number of observation is important. It was concluded that two SNPs of g.1117G/A and g.1125A/C are potential as marker-assisted selection (MAS) for reproductive traits in Pasundan cows because of moderate PIC value.
Short Communication: The species diversity and composition of roadside trees in five cities in Sumatra, Indonesia WIRYONO WIRYONO; YANSEN YANSEN; ADITYA ADITYA; DAVID JUARA LAMHOT; JURIAH HUTAHAEAN
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190503

Abstract

Wiryono, Yansen, Aditya, Lamhot DJ, Hutahaean J. 2018. Short Communication: The species diversity and composition of roadside trees in five cities in Sumatra, Indonesia. Biodiversitas 19: 1615-1621. Roadside trees make living in a city more enjoyable due to their aesthetic values and ecosystem services. The ecological benefits of roadside trees may be enhanced by increasing the species diversity and the proportion of native species. The objective of this study was to know the species diversity and composition of roadside trees in the cities of Palembang, Bengkulu, Curup, Pematang Siantar and Argamakmur, in Sumatra Island, Indonesia, varying in size and altitude. Data of trees were collected from selected streets and analyzed to determine the species richness (S), Shannon-Wiener index of diversity (H?) and Ellenberg index of community similarity (ISE). The results showed that the species richness in a city ranged from 7 to 26, with the diversity index between 1.05 and 2.08. The large and medium cities had higher S and H?. More introduced species were found, both in number of species and number of individuals, than the native ones. The similarity among cities in species composition ranged from 47 to 82%. Overall, Swietenia macrophylla, an introduced species, was the most abundant species. The S and H? values of all cities were considered low and the composition of tree species did not support the conservation of native species. It is, therefore, essential to increase the species diversity of street trees, especially by planting native species.
Short Communication: Habitat characterization of Aristolochia baetica L. in Tessala Mount, Western Algeria HAKEMI ZAHRA; MEHDADI ZOHEIR; CHERIFI KOUIDER; AISSET AMEL
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190506

Abstract

Zahra H, Zoheir M, Ali L, Kouider C, Amel A. 2018. Short Communication: Habitat characterization of Aristolochia baetica L. in Tessala Mount, Western Algeria. Biodiversitas 19: 1632-1641. The aim of the current investigation was to study the characterization of the habitat of Aristolochia baetica L., an Ibero-Mauretanian species, present in Tessala Mount (West of Algeria). Twenty-four phytoecological surveys were realized on eight stations (St1-St8) in which the species is present. The floristic inventory allowed us to identify 68 species which are part of the floristic of A. Baetica, distributed in 31 botanical families; 6 biological and 19 biogeographical types. The assessment of edaphic and plant data using correspondence factor analysis (CFA) and hierarchical ascending classification (HAC) showed that A. baetica is a member of plant training of scrublands and grows especially in stations at low heights with a high rate of limestone.
Carbon storage variability in seagrass meadows of Marine Poton Bako, East Lombok, West Nusa Tenggara, Indonesia FIRMAN ALI RAHMAN; IBNUL QAYIM; YUSLI WARDIATNO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190505

Abstract

Rahman FA, Qayim I, Wardiatno Y. 2018. Carbon storage variability in seagrass meadows of Marine Poton Bako, East Lombok, West Nusa Tenggara, Indonesia. Biodiversitas 19: 1626-1631. The increase of atmospheric CO2 concentration in the last decades leads to global warming, having an adverse effect on the environment condition on the Earth. One of the natural mechanism as an effort to reduce the impact of global warming is carbon absorption and storage through photosynthesis mechanism of seagrass vegetation. Research conducted at Poton Bako, a district in East Lombok was aimed to reveal the composition of seagrass species, density, seagrass coverage, the biomass of seagrass tissue, content of carbon storage in seagrass tissue (above and below substrates), carbon content in seagrass sediments, and estimation of carbon stock in the area. The research included observation of species composition, and the sample was collected from 0.5 m × 0.5 m plot area. The total plot area was 36 on six lanes with the space between plots 25 m and between lanes 100 m. Six species from two families were found in the seagrass meadows, i.e., Cymodocea rotundata, Enhalus acoroides, Halophila minor, Holodule uninervis, Thalassia hemprichii and Thalassodendron ciliatum. The three highest total densities were C. rotundata 214.67±110.469 stands m-2, T. hemprichii 85.11±41.471 stands m-2, and H. minor 42.22±44.204 stands m-2. Species with the highest coverage value at all observation plots was C. rotundata (33.47±26.748 %), and T. ciliatum had the lowest value (2.12±5.071 %). The total biomass was 676.32 g DW m-2 with biomass above substrate 329.94±57.725 g DW m-2 and below substrate 654.88±81.199 g DW m-2. The carbon content of substrate ranged from 0.11% to 0.51% with the average of 0.35±0.081%, which was categorized low. The total average of carbon storage in seagrass was 447.92 g C m-2 comprising 142.77 g C m-2 of their tissue above substrate and 305.15 g C m-2 below substrate. Regarding the area, the total carbon stored in seagrass meadows with 56.65 ha area was 249.27 t C ha-1.
Diversity and abundance of termites along altitudinal gradient and slopes in Mount Slamet, Central Java, Indonesia HERY RATIKNYO; INTAN AHMAD; BAMBANG HERU BUDIYANTO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190508

Abstract

Pratiknyo H, Ahmad I, Bambang Heru Budianto BH. 2018. Diversity and abundance of termites along altitudinal gradient and slopes in Mount Slamet, Central Java, Indonesia. Biodiversitas 19: 1649-1658. A study on diversity and abundance of termites along an altitudinal gradient and the different slope was done in plantation forest of Mount Slamet. This research aimed to define the species composition along the altitudinal gradient and slope and to define the environmental factors affecting it. The sampling of termites was carried out following standardized belt transects (100 m x 2 m) laid vertically on the altitude of 700 up to 1300 m asl on four slopes. Each 100 m length of the belt transects was divided into 20 sections (5 m x 2 m), and termites were taken in each section from the trees, branches, barks and the ground. Data of termites composition were analyzed for diversity index (Shanon-Wiener, H') and domination index (Simson, D); the correlation among environmental factors with the family were analyzed by multivariate correlation, and then a Canonical Correspondence Analysis (CCA) was used to define the most associated environmental factor to the diversity and abundance of termites. A total of 7349 individuals belonging to 11 species in nine genera, five subfamilies, and two families were recorded. Four wood feeder species were Schedorinotermes javanicus, Macrotermes gilvus, Odontotermes javanicus and Microtermes insperatus, while humus feeder was Capritermes samarangi, Procapritermes stiger, Nasutitermes matangensis, N. matangensiformis, Bulbitermes spp., and the soil feeders were PeriCapritermes javanicus and P. dolichocephalus. Based on the Shanon-Wiener index, the Western Slope was the highest in diversity with five main environmental factors (altitudes, maximal rainfall, N content, manure application and light intensity) the most influencing while the CCA ordination showed that the canopy closure and light intensity were the most associated factor to the diversity and abundance of termites. In conclusion, the slopes caused the species richness differently with the most associated environmental factors was the canopy closure and light intensity.
Dracorhodin: A potential marker compound for detecting the presence of dragon’s blood resin from Daemonorops originated from Indonesia TOTOK KARTONO WALUYO; SANTIYO WIBOWO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190510

Abstract

Waluyo TK, Wibowo S. 2018. Dracorhodin: A potential marker compound for detecting the presence of dragon’s blood resin from Daemonorops originated from Indonesia. Biodiversitas 19: 1665-1671. Dragon's blood typifies as red-colored resin, which is presented by several plant genus, i.e., Dracaena, Daemonorops, Croton, and Pterocarpus. In Indonesia, dragon's blood is originated from Daemonorops which grows scattered in Sumatera and Kalimantan islands. Relevantly, this study was conducted to identify the specific compounds of dragon's blood originated from Indonesia's Daemonorops. Dragon's blood test samples were originated from 16 different towns in Indonesia, which are known as the center of dragon's blood-production. The samples were in powder and solid formation. The compounds of samples were analyzed using GC-MS instrument. Results revealed that dragon's blood in powder and solid formation were inherently similar. Dragon's blood powder was obtained from wet extraction, while dragon's blood solid from dry extraction. Results of chemical analysis on 16 dragon's blood samples disclosed that three compounds were frequently detected associated with dragon's blood presence. Dracorhodin compound was detected in 16 dragon's blood samples i.e 3,4-dihydro-5-methoxy-6-methyl-2-phenyl-2H-1-benzopyran-7-ol in 13 samples; and trendione in 9 samples. Accordingly, dracorhodin could serve as the most compound containing in dragon's blood originated from Indonesia's Daemonorops, which could be observed from 16 tested Daemonorops dragon's blood samples from several regions (towns) in Indonesia.
Phenotypic variation and genetic alteration of Spathoglottis plicata resulted from in vitro cultured seed irradiated with X-Ray SUYITNO ALOYSIUS; AZIZ PURWANTORO; KUMALA DEWI; ENDANG SEMIARTI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190507

Abstract

Aloysius S, Purwantoro A, Dewi K, Semiarti E.. 2018. Phenotypic variation and genetic alteration of Spathoglottis plicata resulted from in vitro cultured seed irradiated with X-Ray. Biodiversitas 19: 1642-1648. A terrestrial orchid species among genus Spathoglottis as widely cultivated is S. plicata. Variability development of the species through mutation induction has been carried out, but its morphological variations and genetic changes have not been investigated. The purpose of this study is to identify the phenotypic variation and genetic alteration of S. plicata resulted from in vitro cultured seed irradiated with X-ray. Radiation was given at the doses of 0; 6; 12; 18 and 24 rad. The samples were surviving plants resulted from irradiated seeds. Phenotypic variations observed were the number, length and width of the leaf, number of tiller, and flower characteristics. Genetic alteration was detected from DNA homologous POH1, a key gene determining of shoot morphogenesis. Results show that there are variations of leaf color, length and width of the leaf, and the number of the tiller. Plants start to flower at the age of 30 months. The plants flowering reach 64.7% (WT), 50.0% (6 rad), 33.3% (12 rad), 33.3% (18 rad), and 40% (24 rad). Flower color is ranged from white, white slightly purple, purplish white, light purple, reddish purple and purple, found both in mutants and wild-type groups. The alignment result of POH1 homologous DNA obtained from PCR cDNA shows the nucleotide differences at some points between mutants and wild-type that indicate the occurrence of DNA alteration. X-ray induces the changes of POH1 homologous DNA, but it has no obvious relationship to the flower variation.
Biodiversity and distribution of termite nests in West Papua, Indonesia NIKEN SUBEKTI; ISMA NURVAIZAH; JAN HENDRIEK NUNAKI; HENGKY LUKAS WAMBRAU
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190509

Abstract

Subekti N, Nurvaizah I, Nunaki JN, Wambrau HK, Mar’ah R. 2018. Biodiversity and distribution of termite nests in West Papua, Indonesia. Biodiversitas 19: 1659-1664. Termites play an important role in plant nutritive cycles by contributing to the disintegration and decomposition of organic matter. However, termites also cause damage to wood in nature as well as in buildings. Therefore, termites are potential pests and need to be controlled. Effective control of termites requires knowledge about their species prevalence and distribution. The current study aimed to identify the termite species and nest distributions in West Papua. A survey to determine the distribution of termite nests used the transect line method with intervals of 50 m in width and length. The results showed that there were 35 termite nests on 10 host trees species, namely Calophyllum inophyllum (Bintanggur), Mastixiodendron pachyclados (Lancat), Intsia bijuga (Kayu besi), Inocarpus fagifer (Gayang), Canarium hirsutum (Kenari), Horsfieldia parviflora (Pala hutan), Diospyros papuana (Black wood), Aleurites moluccana (Kemiri), Pometia coreacea (Matoa), and Vatica rassak (Resak). These nests harbored three termite genera, including Microcerotermes, Longipeditermes, and Bulbitermes. Microcerotermes were the most commonly found and had a wide distribution across almost all points of observation.

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