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INDONESIA
Jurnal AgroBiogen
Published by Kementerian Pertanian
ISSN : 19071094     EISSN : 25491547     DOI : -
Core Subject : Agriculture,
Agriculture, Biological Sciences & Forestry
Jurnal AgroBiogen memuat artikel primer dan sekunder hasil penelitian bioteknologi dan sumberdaya genetik tanaman, serangga, dan mikroba pertanian. Jurnal ini diterbitkan tiga kali setahun pada bulan April, Agustus dan Oktober oleh Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumberdaya Genetik Pertanian
Arjuna Subject : -
Articles 8 Documents
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Search results for , issue "Vol 7, No 1 (2011): April" : 8 Documents clear
Faktor Virulensi AvrBs3/PthA pada Ras III, Ras IV, Ras VIII, dan IXO93-068 Patogen Hawar Daun Bakteri (Xanthomonas oryzae pv. oryzae) Dwinita W Utami; Triny S Kadir; Siti Yuriyah
Jurnal AgroBiogen Vol 7, No 1 (2011): April
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jbio.v7n1.2011.p1-8

Abstract

AvrBs3/PthA Virulence Factor of Bacterial Leaf BlightRace III, Race IV, Race VIII, and IXO93-068. Dwinita W.Utami, Triny S. Kadir, and Siti Yuriyah. Bacterial leafblight (BLB) is an important disease of rice and presentthroughout many of the rice-growing regions in the world,also in Indonesia. Xanthomonas oryzae pv. oryzae (Xoo) isthe causal agent and a member of the Protebacteria and likemany other this phyllum have a type III secretion system forprotein virulence effector (PVE) released on their pathogenicitysystem. Commonly, PVE in Xanthomonas sp., iscoded by AvrBs3/PthA family gene. This research wascoducted to identify the virulence factor of AvrBs3/PthA ondominant Indonesian BLB isolates (Race III, Race IV, RasVIII, and IXO93-068). This objective was obtained bysequence analysis through designed markers for membersof the virulence factor AvrBs3/PthA gene family (PthXo4,avrXa7#38, PthXoS and avrXa7sacB50). Results gave informationthat RaceIII is a dependent elicitor race due to noPVE transcript formed and intraceluler protein target withRLL type on NLS (nuclear localization signal). RaceIV andRaceVIII are the virulent race which PVE active formed withintraceluler protein target and have the RLL and RLLP typefor the NLS signal. While isolate IXO93-068 is a virulenisolate that active formed a PVE but the extraceluler proteintarget is due to no type of NLS. Based on cluster analysis,Race VIII has a genetic distance closely to PthXoS andavrXa7sacB50.
Konstruksi Kandidat Gen AV1 Begomovirus pada pBI121 dan Introduksinya ke dalam Tembakau Menggunakan Vektor Agrobacterium tumefaciens Tri Joko Santoso; Muhammad Herman; Sri H Hidayat; Hajrial Aswidinnoor; Sudarsono Sudarsono
Jurnal AgroBiogen Vol 7, No 1 (2011): April
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jbio.v7n1.2011.p9-18

Abstract

Construction of Begomovirus AV1 Gene Candidate intopBI121 and Its Introduction into Tobacco by usingAgrobacterium tumefaciens Vector. Tri J. Santoso,Muhammad Herman, Sri H. Hidayat, HajrialAswidinnoor, and Sudarsono. Infection of Begomovirushas caused leaf curl disease in tomato. This infection hassignificantly impact on yield losses of tomato production.Recently, in Indonesia there was no effectively way tocontrol this disease. The use of resistant tomato variety isone of strategies to control this virus. Genetic engineeringtechnology gives an opportunity to develop the transgenictomato resistant to Begomovirus through pathogen derivedresistance (PDR) approach. The objectives of this studywere to construct the Begomovirus AV1 candidate gene inthe pBI121 and to introduce the construct into tobacco plantgenome through Agrobacterium tumefaciens vector. A seriesactivites in gene construct have been conducted includePCR amplification of AV1 gene using a pair of specificprimer, cloning the gene into pGEM-T easy, transformation ofthe clone into Escherichia coli DH5α competent cell,construct the gene into pBI121, and transform the constructinto A. tumefaciens. Leaf segments of in vitro tobacco plantwere transformed by co-cultivation with A. tumefacienscontaining ToLCV-AV1 construct. In the research activitiy,Indonesian Begomovirus AV1 gene was successfullyamplified and inserted in expression vector plasmid pBI121.Tobacco transformants carrying kanamycin-resistant gene(nptII gene) were regenerated and established in theglasshouse. Those transformant plants are expectedcontaining the AV1 gene.
Peranan Zat Pengatur Tumbuh dalam Perbanyakan Tanaman melalui Kultur Jaringan Endang Gati Lestari
Jurnal AgroBiogen Vol 7, No 1 (2011): April
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jbio.v7n1.2011.p63-68

Abstract

The Role of Growth Regulator in Tissue Culture PlantPropagation. Endang G. Lestari. In plant tissue culture,growth regulator has significant roles such as to control rootand shoot development in the plant formation and callusinduction. Cytokinin and auxin are two prominent growthregulator. Cytokinin consists of BA (benzil adenin), kinetin(furfuril amino purin), 2-Ip (dimethyl allyl amino purin), andzeatin. While auksin covers IAA (indone acetic acid), NAA(napthalene acetic acid), IBA (indole butiric acid) 2.4-D (2.4-dicholophenoxy acetic acid), dicamba (3,6 dicloro-O-anisicacid), and picloram (4-amino 3,5,6-tricloropicolinic acid).The emphasis of plant growth purposes decide the use ofgrowth regulator. Cytokinin is applied mainly for the purposeof shoot, while auxin is mainly used for the purpose of rootand callus. The application of growth regulator application isvaried, depending on the genotype and physiologicalcondition of the plant. The existence of a certain growthregulating substances can enhance growth regulator activityof other substances. The type and concentration of theappropriate growth regulators for each plant is not the samebecause it depends on the genotype and physiologicalcondition of plant tissue. However so often both arefrequently required depend on the ratio/ratio of auxincytokines or vice versa. The existence of a certain growthregulating substances can enhance growth regulator activityof other substances. The type and concentration of theappropriate growth regulators for each plant is not the samebecause it depends on the genotype and physiologicalcondition of plant tissue. For the propagation, multiple andadventive shoots along with embriosomatic formation couldbe applied. The seedling is obtained from one somatic cell.Here, strong auxin, such as dicamba and picloram 2.4-D, isutilized for callus production. For this reason, seedling perunit could be produced more than that of organogenesis.
Phylogenetic and Maturity Analyses of Sixty Soybean Genotypes Used for DNA Marker Development of Early Maturity Quantitative Trait Loci in Soybean I Made Tasma; Dani Satyawan; Ahmad Warsun; Muhamad Yunus; Budi Santosa
Jurnal AgroBiogen Vol 7, No 1 (2011): April
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jbio.v7n1.2011.p37-46

Abstract

Phylogenetic and Maturity Analyses of Sixty SoybeanGenotypes Used for DNA Marker Development of EarlyMaturity Quantitative Trait Loci in Soybean. I MadeTasma, Dani Satyawan, Ahmad Warsun, MuhamadYunus, and Budi Santosa. The Indonesian soybeanproductivity is still very low with the national average of 1.3t/ha. One means to improve national soybean productivity isby manipulating harvest index by cultivating very earlymaturing soybean cultivars. Development of early maturingsoybean cultivars can be expedited by using marker-aidedselection. The objective of this study was to select parentallines having contrasted maturity traits and selected parentsmust be genetically distance. The parents then were used todevelop F2 populations for detecting early maturity QTL insoybean. Maturity tests of 60 soybean genotypes wereconducted at two locations, Cikeumeuh (Bogor) and Pacet(Cianjur) using a randomized block design with threereplications. Genomic DNA of the 60 genotypes wereanalyzed using 18 SSR markers and genetic relationship wasconstructed using the Unweighted Pair-Group MethodArithmatic through Numerical Taxonomy and MultivariateSystem program version 2.1-pc. Results showed that the 60genotypes demonstrated normal distribution in bothlocations for days to R1 (32-48d), days to R3 (35-55d), days toR7 (75-92d), and days to R8 (78-99d). Four early maturinggenotypes and three late genotypes were obtained. TotalSSR alleles observed were 237 with average allele per locusof 12.6 (3-29), and average PIC value of 0.78 (0.55-0.89).Genetic similarity among genotypes ranges from 74.8-95%.At similarity level 77% divided the genotypes into six clusters(the four selected early maturing genotypes located inclusters III and IV, while the three late genotypes located incluster II). Based on maturity data, pubescent color, andphygenetic analysis seven parents were selected (four earlymaturing genotypes B1430, B2973, B3611, B4433 and threelate genotypes B1635, B1658, and B3570). Twelve F2populations were developed with the aid of SSR markersSatt300 dan Satt516. Two of the populations will be used todevelop DNA markers for earliness in soybean.
Purifikasi dan Karakterisasi α-amilase Termostabil dari Bacillus stearothermophilus TII-12 Lestari, Puji; Richana, Nur; Darwis, Abdul Aziz; Syamsu, Khaswar; Murdiyatmo, Untung
Jurnal AgroBiogen Vol 7, No 1 (2011): April
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jbio.v7n1.2011.p56-62

Abstract

Purification and Characterization of Thermostableα-amylase from Bacillus stearothermophilus TII-12. PujiLestari, Nur Richana, Abdul A. Darwis, Khaswar Syamsu,and Untung Murdiyatmo. Thermostable α-amylase is apotential enzyme employed in the starch processing andwidely used in food industries, but this enzyme is stillimported. The local enzyme production would be moreeconomist and useful for its broad applications. Here wereport α-amylase from indigenous bacteria TII-12 which waspurified and characterized, as well as analyzed its hydrolysisproduct on cassava starch. The enzyme of Bacillusstearothermophilus TII-12 partially purified by ultrafiltration,acetone precipitation and gel filtration (Sephadex G-100)showed the reduced total activity, total protein and yield, butincreased the specific activity. The enzyme had a Km of 1,06mg/ml and Vmax of 1,21 mol/min, with optimal activity at pH 7and 90oC. An apparent molecular mass was of 192.932,8Dalton, as estimated by Native-Polyacrylamide Agarose Gelelectrophoresis. Its activity was inhibited by the divalentcation chelator such as EDTA and CuSO4 but activated bycalcium ion. Hydrolysis products of this enzyme on cassavastarch were glucose, dextrin, maltose and oligosaccharides.After 24 hours of hydrolysis, the concentration of glucoseand maltose reached 51.970 and 10.090 ppm, respectively.The thermostable α-amylase of TII-12 is an endo-α-amylaseand prospective to be applied on starch liquefaction withhigh temperature process.
Efikasi Gen RB pada Tanaman Kentang Transgenik Katahdin SP904 dan SP951 terhadap Empat Isolat Phytophthora infestans dari Jawa Barat Ambarwati, Alberta Dinar; Sumaraw, S M; Purwito, Agus; Herman, Muhammad; Suryaningsih, E.; Aswidinnoor, Hajrial
Jurnal AgroBiogen Vol 7, No 1 (2011): April
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jbio.v7n1.2011.p28-36

Abstract

Efficacy of RB gene in transgenic potato Katahdin SP904and SP951 to West Java isolates of Phytophthorainfestans. A. Dinar Ambarwati, S.M. Sumaraw, AgusPurwito, M. Herman, E. Suryaningsih, and HajrialAswidinnoor. Potato late blight, caused by Phytophthorainfestans is one of the most devastating plant disease. Potatoyield losses due to this disease ranged from 47-100%. Amajor late blight resistance gene, called RB, previously wasidentified in the wild potato species Solanumbulbocastanum. RB gene has been integrated into cultivatedpotato Katahdin using Agrobacterium-mediated transformation,and showed durable and broad spectrum resistanceeither in laboratory assay or in confined field trial. Evaluationof transgenic Katahdin SP904 and SP951 was conducted toverify whether the RB gene with broad spectrum to allknown races of P. infestans in the United States and inToluca, Mexico was also effective against P. infestansisolates in Indonesia. Efficacy of RB gene was evaluated forfoliar and tuber resistance to West Java isolates. TransgenicKatahdin were more resistant in foliar than non transgenicplants, at 14 days after inoculation. Diseases intensity oftransgenic Katahdin SP904 and SP951 were 19.8-43.8%,whereas non transgenic Katahdin, Granola, and Atlanticwere 46.9-100%. In contrast to the foliar resistancephenotype, RB-containing tubers in transgenic Katahdin didnot exhibit increased resistance to Lembang, Pangalenganand Galunggung isolates. Tubers of transgenic KatahdinSP904, SP951, and non transgenic Katahdin showed lesionvolume of 0.93, 0.91, and 0.91 cm3, respectively. RB gene intransgenic Katahdin showed efficacy against late blight P.infestans in foliar, but did not showed efficacy in tuber.Transgenic Katahdin RB thus providing a potential source ofresistance for breeding programs.
Genetic Diversity Analysis of Jatropha Curcas Provenances Using Randomly Amplified Polymorphic DNA Markers Dani Satyawan; I Made Tasma
Jurnal AgroBiogen Vol 7, No 1 (2011): April
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jbio.v7n1.2011.p47-55

Abstract

Genetic Diversity Analysis of Jatropha CurcasProvenances Using Randomly Amplified PolymorphicDNA Markers. Dani Satyawan and I Made Tasma.Jatropha curcas nuts are rich in oil that is higly suitable forHak Cipta © 2011, BB-Biogenthe production of bio-diesel or to be used directly inmodified diesel engines. The objective of this study was toassess the extent of genetic diversity among 50 J. curcasprovenances and one accession of J. integerrima usingRAPD markers. The fifty J. curcas provenances werecollected from ecologically diverse regions of Indonesia, andplanted in the Pakuwon Experimental Station (Sukabumi,West Java). Fourteen RAPD primers with 60-80% G+Ccontent were used in this genetic diversity analysis andproduced 64 bands with 95.7% polymorphism level. ThePolymerase Chain Reactions used to generate the RAPDbands sometimes produced inconsistent and nonreproducibleresults, necessitating the duplication of eachreaction to prevent scoring errors. Sixty one validated bandswere subsequently used for genetic diversity analysis usingUnweighted Pair Group Method Arithmetic (UPGMA)method and Dice coefficients. It was shown that thesimilarity coefficients among the provenances ranged from0.2 to 0.98 with an average similarity of 0.75. Dendrogramanalysis produced two major groups of provenances, withone outlier from South Lampung. There was no tendency forprovenances originated from nearby regions to clustertogether in each group, and several provenances showedmore similarities with provenances originated from distantregions. This pattern lent credence to reports that Jatrophawas introduced to Indonesia around four centuries ago andwas mainly spread by humans. Based on the meansimilarities among the accessions and their clusteringpattern, the genetic diversity of the Jatropha collectionappeared to be fairly low. Future additions of geneticmaterials from more diverse genetic background will benecessary to maintain the current progress of Jatrophaimprovement program.
Introduksi Konstruk Over-Ekspresi Kandidat Gen OsWRKY76 melalui Agrobacterium tumefaciens pada Tanaman Padi Nipponbare Aniversari Apriana; Atmitri Sisharmini; Wening Enggarini; Sudarsono Sudarsono; Nurul Khumaida; Kurniawan Rudi Trijatmiko
Jurnal AgroBiogen Vol 7, No 1 (2011): April
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/jbio.v7n1.2011.p19-27

Abstract

Delivering of Over-Expression Construct OsWRKY76Candidate Gene in Rice cv. Nipponbare throughAgrobacterium tumefaciens. Aniversari Apriana, AtmitriSisharmini, Wening Enggarini, Sudarsono, Nurul.Khumaida, and Kurniawan R. Trijatmiko. Plant geneticimprovement can be done through classical breeding orgenetic engineering. WRKY is a transcription factor involvedin regulating plant defense responses. OsWRKY76 gene islocated in a narrow segment of chromosome 9 which isidentified previously to be related to wide spectrumresistance in rice. A sequence of OsWRKY76 (+1.200 bp)has available in the gene bank and it makes possible toisolate, clone, and construct the gene into over-expressionvector. The aim of this research was to assemble an overexpressionconstruct of OsWRKY76 candidate gene andintroduce it into rice through Agrobacterium-mediatedtransformation. A construct of pCAMBIA-1301::35S::OsWRKY76 has been successfully assembled andtransformed into embryogenic calli of rice cv. Nipponbareusing A. tumefaciens strain Agl-1 and EHA 105. A number of126 independent lines has been produced, in which Agl-1showed 3.8 times more efficient than EHA 105. PCR analysisof randomly selected 25 independent lines showed that allof them positively contained hptII gene, a selectable markerused in the over-expression construct of the OsWRKY76candidate gene. Based on the result, it could be concludedthat the over-expression construct of OsWRKY76 candidategene have been successfully introduced into the tissue ofNipponbare.

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