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Journal of Mathematical and Fundamental Sciences
Published by Institut Teknologi Bandung
ISSN : 23375760     EISSN : 23385510     DOI : https://doi.org/10.5614/j.math.fund.sci.
Core Subject : Science, Education,
Astronomy Chemistry Earth & Planetary Sciences Mathematics Physics
Journal of Mathematical and Fundamental Sciences welcomes full research articles in the area of Mathematics and Natural Sciences from the following subject areas: Astronomy, Chemistry, Earth Sciences (Geodesy, Geology, Geophysics, Oceanography, Meteorology), Life Sciences (Agriculture, Biochemistry, Biology, Health, Medical, Pharmacy), Mathematics, Physics, and Statistics.
Arjuna Subject : Matematika - Matematika (Lain-Lain)
Articles 6 Documents
 1 
Search results for , issue "Vol. 55 No. 2 (2023)" : 6 Documents clear
Bioinformatic Analysis Strategy in Restriction Enzyme Selection for Indonesian Panulirus homarus Identification by PCR-RFLP Indriatmoko Indriatmoko; Adi Pancoro
Journal of Mathematical and Fundamental Sciences Vol. 55 No. 2 (2023)
Publisher : Directorate for Research and Community Services (LPPM) ITB

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.5614/j.math.fund.sci.2023.55.2.4

Abstract

The spiny lobster (Panulirus homarus) is a valuable fishery commodity in Indonesia, particularly in its juvenile life form. However, identifying the early life forms of the spiny lobster can be challenging, as it exhibits similar morphological features compared to the juveniles of other Panilurid lobsters. Molecular-based identification, specifically DNA sequencing, is the best method for species identification, but it requires advanced instruments and is costly. An alternative method is proposed here, using the PCR-RFLP technique, which is low-cost, rapid, and has standard instrumentation requirements. The challenge with this method is selecting the appropriate restriction enzyme to determine the targeted species’ identity. This study proposes using the REfind (https://github.com/indriatmoko07/REfind), R package to select the best restriction enzyme for identifying P. homarus, applicable to other species. The bioinformatics workflow used in this study successfully identified BseSI or BmgI as the most suitable restriction enzymes among 739 restriction enzymes to differentiate P. homarus from other Panilurid species. This result was validated by employing a wet lab test using the BseSI enzyme and successfully validated the bioinformatics result. These findings may be useful for biologists in conducting various studies that require rapid, low-cost, and identification of specific species in the future.
Magnetic Characterization of Fine Sediment in the Solo Basin Indonesia Budi Legowo; Anti Fatkhul Qoiriah; Artono Dwijo Sutomo; Shandiyano Putra; Wiwit Suryanto; Budi Purnama
Journal of Mathematical and Fundamental Sciences Vol. 55 No. 2 (2023)
Publisher : Directorate for Research and Community Services (LPPM) ITB

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.5614/j.math.fund.sci.2023.55.2.1

Abstract

The magnetic characteristics of fine sediment samples from the Solo Basin are reported in this paper. Magnetic fine sediment was identified by magnetic susceptibility mapping based on sampling of 182 points. Then, a depth analysis (on 7 selected sampling points) was performed using X-ray fluorescence spectrometry, which showed an iron oxide content of up to 55.42%, while X-ray diffractometry confirmed magnetite minerals with crystallite size ≤100 nm. Further, the vibrating sample magnetometry results verified the magnetic characteristics under a single-domain configuration. The characteristic magnetic susceptibility map showed that there is a lithogenic effect on sediment in the Solo Basin. In addition, anthropogenic activities seem to play a pivotal role in distributing magnetic materials.
Sedimentary Facies, Palynology, and Organic Geochemistry of Eocene Kalumpang Formation in Lariang and Karama Areas, West Sulawesi, Indonesia Rakhmat Fakhruddin; Nisa Nurul Ilmi; Edy Sunardi; Taufik Ramli; Agus Ardianto Budiman; Indra Nurdiana; Dzul Fadli
Journal of Mathematical and Fundamental Sciences Vol. 55 No. 2 (2023)
Publisher : Directorate for Research and Community Services (LPPM) ITB

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.5614/j.math.fund.sci.2023.55.2.3

Abstract

The Kalumpang Formation was deposited in a delta plain setting. A Middle to Late Eocene age (Proxapertites operculatus zone) was inferred from palynological analysis, with a paleoenvironment in a coastal plain setting with a strong terrestrial influence. Samples from the Kalumpang Formation indicate a marginal to early mature stage for hydrocarbon generation. It is mostly composed of gas-prone to oil and gas-prone Type III kerogen facies. The biomarker character of both the rock and oil samples suggests a terrestrial origin, with a significant contribution of estuarine or bay organic material. The oil derives from a non-carbonate lithology, while the rock samples are from carbonate/calcareous shale origin. The abundance of oleanane compound and C30 resins suggests higher plant angiosperm input of Late Cretaceous or younger age for both the rock and the oil samples. The oil seep contains more abundant oleananes compared to the carbonaceous mudstone of the Kalumpang Formation. This suggests that the oil originated from more marine facies than the rock samples, which were deposited in a delta plain setting. This study demonstrated the agreement of depositional environment interpretation and age assessment between lithofacies, palynological, and organic geochemistry analysis.
Structural and Photoluminescence Properties of Ca2+-Substituted Self-Activated Photoluminescence Material of Na2TiSiO5 Dzaky Dian Ruhimat; Fainan Failamani; Bambang Prijamboedi
Journal of Mathematical and Fundamental Sciences Vol. 55 No. 2 (2023)
Publisher : Directorate for Research and Community Services (LPPM) ITB

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.5614/j.math.fund.sci.2023.55.2.6

Abstract

The effects of Ca2+ substitution on the structural and optical properties of Na2TiSiO5 were studied. It was expected that the Ca2+ ions would replace Na+ ions and change the coordination of Ti4+-O2- as a luminescence center. Na2(1‑x)CaxTiSiO5 (x = 0.00, 0.50, 1.00) samples were synthesized using the solid-state method, and their structural properties, the local Ti4+-O2- coordination, the absorption spectra, and the photoluminescence properties were studied. The electronic structure of Na2(1-x)CaxTiSiO5 with x = 0.00 and 1.00 was also calculated using the Full Potential Linear Augmented Plane Wave (FP-LAPW) method to explain some of the observed properties. The Ca2+ substitution resulted in a phase transformation from an orthorhombic to a monoclinic structure. The number of TiO6 octahedra increased with the increase of Ca2+ and correlated with the decrease of PL emission intensity of the Na2(1‑x)CaxTiSiO5 samples. The Ti-3d bands in the CaTiSiO5 were more dispersive than in the Na2TiSiO5 and were responsible for the PL emission intensity reduction.
Optical Spectroscopy and Photoionization Model of Planetary Nebula NGC 6572 Muhammad Fajrin; Hakim Luthfi Malasan; Evan Irawan Akbar
Journal of Mathematical and Fundamental Sciences Vol. 55 No. 2 (2023)
Publisher : Directorate for Research and Community Services (LPPM) ITB

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.5614/j.math.fund.sci.2023.55.2.2

Abstract

We investigated NGC 6572 through optical spectroscopy to determine its kinematical and chemical properties. Two intermediate dispersion spectra (R~5000) centered around Hα and Hβ were used to derive the nebular expansion velocity from emission lines associated with Hα, Hβ, [OIII], [NII], and [SII] ions. A low dispersion spectrum (R~1000) was used to determine the nebular electron temperature, density, and chemical composition. We performed photoionization modeling to construct a self-consistent nebular model, while intermediate-resolution spectral images showed the global elliptical structure of the nebula. The expansion velocity deduced from most of the emission lines is consistent with the typical expansion velocity of planetary nebulae, i.e., around 15-20 kms-1. The nebular physical properties align well with those determined by other studies. The nebular abundances were found to be lower than the solar abundances (except for oxygen) but still comparable with the abundances derived by other researchers. The photoionization model generated spectral lines that are consistent with the lines found in the observations. Further spectroscopic observations with higher resolution and wider range at various position angles will be very useful to reveal a more complete and detailed structure of the nebula and to improve the determination of the nebular physical properties.
Geochemistry of I-type Volcanic Arc Granitoid From Tanggamus Regency, Southern Sumatra Ronaldo Irzon; Kurnia Kurnia; Muhammad Firdaus; Eko Yulianto; Firdaus Djabar
Journal of Mathematical and Fundamental Sciences Vol. 55 No. 2 (2023)
Publisher : Directorate for Research and Community Services (LPPM) ITB

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.5614/j.math.fund.sci.2023.55.2.5

Abstract

Granitoid intrusion of several provinces on Sumatra is correlated with Southeast Asia tectonics that have occurred since the Permian. Granites from several volcanic arc provinces are located along the western part of Sumatra Island and are found near Bukit Barisan. This study describes the geochemical character of granitoid from the Tanggamus region and its surroundings near the Bukit Barisan cluster. After megascopic description in the field, major oxides, trace elements, and rare earth elements in rock samples were measured using X-ray fluorescence and inductively coupled plasma-mass spectrometry devices. The samples were intermediate to acidic intrusive rocks with SiO2 ranging between 61.35% and 75.29%. The rocks can be described as diorite to granodiorite and were formed as a result of subduction processes. The granitic rock samples showed I-type features of A/CNK value <1.1, volcanic arc granite affinity, K2O/Na2O ratio, and magnesian properties. The total rare earth content was medium with an average of 43.97 ppm. The similarity of the rare earth normalized diagram against the chondrite value indicates that the samples come from an identical origin.

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