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Spawning sites of depik, Rasbora tawarensis (Teleostei, Cyprinidae) in Lake Laut Tawar, Indonesia Zainal A. Muchlisin
Proceedings of The Annual International Conference, Syiah Kuala University - Life Sciences & Engineering Chapter Vol 1, No 1 (2011): Life Sciences
Publisher : Syiah Kuala University

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (2887.117 KB)

Depik, Rasbora tawarensis is an endemic species in Lake Laut Tawar, Indonesia, and this species has been listed as threatened species. Reproductive biology data is one of the important information to strategise conservation plan. This paper reported the spawning ground of the depik, hence this paper is contributing the additional importance information on the reproductive biology of R. in relation to provide comprehensive our understanding on the reproductive biology of this species. The study was conducted during July to November 2009 in Lake Laut Tawar. A total of 13 spawning grounds were detected in the study where the locations are distributed in five villages namely, five locations in Mendale, two locations in Kelitu, two locations in Gegarang, three locations in Bewang dan one location in Pedemon. However, only four sites remained active in the dry season i.e. two sites in Kelitu and two sites in Gegarang villages.

Characteristics of nesting habitat of sea turtle Lepidochelys olivacea in Lhoknga Beach, Aceh Besar District, Indonesia Hindar Hindar; Zainal A. Muchlisin; Faisal Abdullah
Aceh Journal of Animal Science Vol 3, No 1: July 2018
Publisher : Syiah Kuala University

The purpose of this study was to determine the characteristics of nesting habitat of sea turtle in Lhoknga beach. The observation was conducted at three locations from January to March 2016. The study showed that the coastal slope average ranges 1.03 ° - 1.38 °. The average of nest temperature was 28.05 °C to 29.47 °C (inside the nest) and from 28.77 ° C to 29.95 ° C (at the surface of the nest). The width beach at high tide ranges from 20.17 m to 21.83 m and 31 m to 33.83 m at low tide. The nest humidity ranges from 20.5% -24.15%. There were six species of coastal vegetation recorded during the study, where station 1 has higher of density and diversity of the coastal vegetation. In general, Lhoknga Beach is suitable for nesting of the sea turtle. A total of 13 sea turtles (Lepidochelys olivacea) were nesting during the study, where station 1 had higher of nesting frequency.

Inshore migration of tropical glass eels (Anguilla spp.) in Lambeso River, Aceh Jaya District, Aceh Province, Indonesia Zainal A. Muchlisin; Maulidin Maulidin; Abdullah A. Muhammadar; Dedi F. Putra
Aceh Journal of Animal Science Vol 1, No 2: December 2016
Publisher : Syiah Kuala University

The objective of the present study was to evaluate the migration time of glass eels (Anguilla spp.) in the estuary of Lambeuso River, Aceh Jaya District, Indonesia. The survey was done in March and June 2015. The sampling location was determined based on an initial survey during February 2015 by considering the river condition. Based on initial survey there are no glass eels were recorded during noon time, and therefore the sampling was focused at night. The sampling was done four times a month (weekly basis) for three months (12 times in total) using trap nets based on Hijri Calendar. The trap was settled up to opposite direction of tide (seaward) from 18.00 PM to 06.00 AM and the catches glass eels were monitoring one-hour interval. A total of 131 glass eels were sampled during the study, where the samples were only caught on first (new month) and fourth week (old month) base on Hijri Calender during spring tide and no glass eels were sampled during second and third weeks. It was concluded that the migration time of the glass eels (Anguilla spp.) in Lambeso Rivers is during the dark moon at the new and old month of Hijri Calendar

Grouper DNA barcoding studies in Indonesia: A short review Nanda Muhammad Razi; Zainal A. Muchlisin; Siti Maulida; Mutia Ramadhaniaty; Firman M. Nur; Adrian Damora; Sumarni Laila Buang Manalu; Nur Fadli
Depik Vol 10, No 2 (2021): August 2021
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Indonesia is recognized as one of the territories that have the highest reef fish biodiversity in the world. One of the commercially valuable fish in this area is the groupers (locally name "kerapu"). At least 76 grouper species have been reported in Indonesian waters, with three species were categorized into "vulnerable", five species "Data Deficient", and 68 species under the "Least Concern" category based on IUCN classification. The increasing exploitations rate had been reported caused the grouper stocks in Indonesia to decrease and threatened extinction. However, only limited scientific data is available regarding the grouper in Indonesia, including their identification. In most fish landing sites across Indonesia, the groupers are morphologically identified and recorded as "kerapu" to replace their scientific species names. Accurate species identification is essential in designing appropriate and sustainable management of fisheries resources. One of the tools that have been used in fish identification is DNA barcoding. In the last two decades, this molecular method has been applied to identify many fish groups globally, including grouper fish. This study reviewed the DNA barcoding approach in grouper identification in Indonesia based on the available literature.Keywords:DNA barcodingGrouperMolecular TaxonomyFisheriesIndonesia

Kriopreservasi sperma ikan kawan Poropontius tawarensis menggunakan Dimetil sulfoxida (DMSO) Cut Ruhul Muthmainnah; Zainal A. Muchlisin; Kartini Eriani; Iwan Hasri; Nur Fadli; Abdullah A. Muhammadar
Depik Vol 8, No 3 (2019): December 2019
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Abstract. Kawan fish (Poropuntius tawarensis) is an endemic fish found in Danau Laut Tawar, Central Aceh, Indonesia. This species has been threatened by ecological partubation, unfrindly fishing practices and pollution. Cryopreservation is one of the ways to maintain the presence of these fish. Cryoprotectant (CP) is a critical material in the cryopreservation and DMSO is a common CP used in cryopreservation. Hence, the aim of the present study was to determine the optimum DMSO concentration for kawan fish sperm. The completely randomized design with 6 treatments and 3 replications were used in this study. The tested treatment was the difference of DMSO concentration, namely; 0, 3%, 6%, 9%; 12%, and 15% DMSO was combined with 5% egg yolk. The ratio of sperm to diluent is 1: 20. The cryotubes containing diluented sperm were evaporated at 5 cm from the surface of liquid nitrogen for 10 min, then stored in a liquid nitrogen container at -1960C for 2 weeks, then thawed and analyzed for the quality. The results showed that fresh sperm of kawan fish had motility of 48.67%, pH 7, milky white, with moderate consistency. The assessment of mass movements shows that the sperm has good quality. The ANOVA test showed that the addition of DMSO in diluents gavee significant effect on sperm motility, fertility and hatchability rates of fish eggs (P 0.05). The highest percentage of sperm motility and fertilization rates of fish eggs were found at concentration of 6%, respectively with the value of 46.67% and 45.67%, respectively. The highest percentage of hatching rate was also found in similar concentration of DMSO with the value of 19.33%. %. The DNA integrity test using the electrophoresis gel method showed that there was damage to DNA fish sperm after freezing, the the lower damage was found at 9% and 12% DMSO. It is concluded that the optimum concentration of DMSO for kawan fish sperm is at 6% of DMSO. Key words: kawan fish (Poropuntius tawarensis), cryopreservation, DMSO, DNA integrity Abstrak. Ikan kawan (Poropuntius tawarensis) merupakan ikan endemik yang terdapat di Danau Laut Tawar, Aceh Tengah, Indonesia. Menurut IUCN (International Union for Conservation of Nature), ikan ini termasuk ikan yang terancam punah oleh sebab kerusakan lingkungan, penangkapan tidak ramah lingkungan dan polusi. Salah satu cara untuk menjaga keberadaan ikan tersebut adalah dengan penerapan metode kriopreservasi sperma. Oleh karena itu, penelitian ini bertujuan untuk menentukan konsentrasi DMSO optimum dan melihat kerusakan DNA yang terjadi pada sperma ikan kawan(Poropontius tawarensis) pasca pembekuan.Metode yang digunakan dalam penelitian ini adalah Rancangan Acak Lengkap (RAL) dengan 6 perlakuan dan 3 ulangan.Perlakuan yang diuji adalah perbedaan konsentrasi DMSO dengan konsentrasi 0; 3%; 6%; 9%; 12% dan 15%.DMSO tersebut dikombinasikan dengan 5% kuning telur. Perbandingan sperma dengan pengencer adalah 1 : 20. Semua cryotube yang berisi sperma dan pengencer diuapkan pada jarak 5 cm dari permukaan nitrogen cair selama 10 menit, selanjutnya, disimpan dalam kontainer nitrogen cair bersuhu -1960C untuk disimpan selama 2 minggu. Hasil penelitian menunjukkan bahwa sperma segar ikan kawan memiliki nilai motilitas sebesar 48,67%, pH 7, berwarna putih susu, dengan konsistensi sedang. Penilaian gerakan massa menujukkan bahwa sperma tersebut berkualitas baik. Hasil uji ANOVA menunjukkan bahwa penambahan DMSO dalam pengencer berpengaruh nyata terhadap motilitas, fertilitas dan daya tetas telur ikan kawan (Poropontius tawarensis) (P0,05) setelah pembekuan. Selanjutnya, uji lanjut Duncan menunjukkan bahwa persentase motilitas sperma dan pembuahan telur ikan kawan tertinggi terdapat pada penambahan DMSO dengan konsentrasi 6%, masing-masing sebesar 46,67% dan 45,67%. Persentase penetasan telur tertinggi juga dijumpai pada perlakuan 6% DMSO, dengan nilai 19,33%. Hasil uji integritas DNA menggunakan metode elektrofresis gel menunjukkan bahwa terdapat kerusakan pada DNA sperma ikan pasca pembekuan, Kerusakan yang terendah terdapat pada konsentrasi DMSO 9% dan 12%. Namun secara umum, disimpulkan bahwa konsentrasi optimum untuk kriopreservasi ikan kawan adalah 6% DMSO.Kata kunci: ikan kawan (Poropuntius tawarensis), kriopreservasi, DMSO, integritas DNA

Grouper DNA barcoding studies in Indonesia: A short review Nanda Muhammad Razi; Zainal A. Muchlisin; Siti Maulida; Mutia Ramadhaniaty; Firman M. Nur; Adrian Damora; Sumarni Laila Buang Manalu; Nur Fadli
Depik Vol 10, No 2 (2021): August 2021
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13170/depik.10.2.21255

Indonesia is recognized as one of the territories that have the highest reef fish biodiversity in the world. One of the commercially valuable fish in this area is the groupers (locally name "kerapu"). At least 76 grouper species have been reported in Indonesian waters, with three species were categorized into "vulnerable", five species "Data Deficient", and 68 species under the "Least Concern" category based on IUCN classification. The increasing exploitations rate had been reported caused the grouper stocks in Indonesia to decrease and threatened extinction. However, only limited scientific data is available regarding the grouper in Indonesia, including their identification. In most fish landing sites across Indonesia, the groupers are morphologically identified and recorded as "kerapu" to replace their scientific species names. Accurate species identification is essential in designing appropriate and sustainable management of fisheries resources. One of the tools that have been used in fish identification is DNA barcoding. In the last two decades, this molecular method has been applied to identify many fish groups globally, including grouper fish. This study reviewed the DNA barcoding approach in grouper identification in Indonesia based on the available literature.Keywords:DNA barcodingGrouperMolecular TaxonomyFisheriesIndonesia

Kriopreservasi sperma ikan kawan Poropontius tawarensis menggunakan Dimetil sulfoxida (DMSO) Cut Ruhul Muthmainnah; Zainal A. Muchlisin; Kartini Eriani; Iwan Hasri; Nur Fadli; Abdullah A. Muhammadar
Depik Vol 8, No 3 (2019): December 2019
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13170/depik.8.3.15072

Abstract. Kawan fish (Poropuntius tawarensis) is an endemic fish found in Danau Laut Tawar, Central Aceh, Indonesia. This species has been threatened by ecological partubation, unfrindly fishing practices and pollution. Cryopreservation is one of the ways to maintain the presence of these fish. Cryoprotectant (CP) is a critical material in the cryopreservation and DMSO is a common CP used in cryopreservation. Hence, the aim of the present study was to determine the optimum DMSO concentration for kawan fish sperm. The completely randomized design with 6 treatments and 3 replications were used in this study. The tested treatment was the difference of DMSO concentration, namely; 0, 3%, 6%, 9%; 12%, and 15% DMSO was combined with 5% egg yolk. The ratio of sperm to diluent is 1: 20. The cryotubes containing diluented sperm were evaporated at 5 cm from the surface of liquid nitrogen for 10 min, then stored in a liquid nitrogen container at -1960C for 2 weeks, then thawed and analyzed for the quality. The results showed that fresh sperm of kawan fish had motility of 48.67%, pH 7, milky white, with moderate consistency. The assessment of mass movements shows that the sperm has good quality. The ANOVA test showed that the addition of DMSO in diluents gavee significant effect on sperm motility, fertility and hatchability rates of fish eggs (P 0.05). The highest percentage of sperm motility and fertilization rates of fish eggs were found at concentration of 6%, respectively with the value of 46.67% and 45.67%, respectively. The highest percentage of hatching rate was also found in similar concentration of DMSO with the value of 19.33%. %. The DNA integrity test using the electrophoresis gel method showed that there was damage to DNA fish sperm after freezing, the the lower damage was found at 9% and 12% DMSO. It is concluded that the optimum concentration of DMSO for kawan fish sperm is at 6% of DMSO. Key words: kawan fish (Poropuntius tawarensis), cryopreservation, DMSO, DNA integrity Abstrak. Ikan kawan (Poropuntius tawarensis) merupakan ikan endemik yang terdapat di Danau Laut Tawar, Aceh Tengah, Indonesia. Menurut IUCN (International Union for Conservation of Nature), ikan ini termasuk ikan yang terancam punah oleh sebab kerusakan lingkungan, penangkapan tidak ramah lingkungan dan polusi. Salah satu cara untuk menjaga keberadaan ikan tersebut adalah dengan penerapan metode kriopreservasi sperma. Oleh karena itu, penelitian ini bertujuan untuk menentukan konsentrasi DMSO optimum dan melihat kerusakan DNA yang terjadi pada sperma ikan kawan(Poropontius tawarensis) pasca pembekuan.Metode yang digunakan dalam penelitian ini adalah Rancangan Acak Lengkap (RAL) dengan 6 perlakuan dan 3 ulangan.Perlakuan yang diuji adalah perbedaan konsentrasi DMSO dengan konsentrasi 0; 3%; 6%; 9%; 12% dan 15%.DMSO tersebut dikombinasikan dengan 5% kuning telur. Perbandingan sperma dengan pengencer adalah 1 : 20. Semua cryotube yang berisi sperma dan pengencer diuapkan pada jarak 5 cm dari permukaan nitrogen cair selama 10 menit, selanjutnya, disimpan dalam kontainer nitrogen cair bersuhu -1960C untuk disimpan selama 2 minggu. Hasil penelitian menunjukkan bahwa sperma segar ikan kawan memiliki nilai motilitas sebesar 48,67%, pH 7, berwarna putih susu, dengan konsistensi sedang. Penilaian gerakan massa menujukkan bahwa sperma tersebut berkualitas baik. Hasil uji ANOVA menunjukkan bahwa penambahan DMSO dalam pengencer berpengaruh nyata terhadap motilitas, fertilitas dan daya tetas telur ikan kawan (Poropontius tawarensis) (P0,05) setelah pembekuan. Selanjutnya, uji lanjut Duncan menunjukkan bahwa persentase motilitas sperma dan pembuahan telur ikan kawan tertinggi terdapat pada penambahan DMSO dengan konsentrasi 6%, masing-masing sebesar 46,67% dan 45,67%. Persentase penetasan telur tertinggi juga dijumpai pada perlakuan 6% DMSO, dengan nilai 19,33%. Hasil uji integritas DNA menggunakan metode elektrofresis gel menunjukkan bahwa terdapat kerusakan pada DNA sperma ikan pasca pembekuan, Kerusakan yang terendah terdapat pada konsentrasi DMSO 9% dan 12%. Namun secara umum, disimpulkan bahwa konsentrasi optimum untuk kriopreservasi ikan kawan adalah 6% DMSO.Kata kunci: ikan kawan (Poropuntius tawarensis), kriopreservasi, DMSO, integritas DNA

Grouper DNA barcoding studies in Indonesia: A short review Nanda Muhammad Razi; Zainal A. Muchlisin; Siti Maulida; Mutia Ramadhaniaty; Firman M. Nur; Adrian Damora; Sumarni Laila Buang Manalu; Nur Fadli
Depik Vol 10, No 2 (2021): August 2021
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13170/depik.10.2.21255

Indonesia is recognized as one of the territories that have the highest reef fish biodiversity in the world. One of the commercially valuable fish in this area is the groupers (locally name "kerapu"). At least 76 grouper species have been reported in Indonesian waters, with three species were categorized into "vulnerable", five species "Data Deficient", and 68 species under the "Least Concern" category based on IUCN classification. The increasing exploitations rate had been reported caused the grouper stocks in Indonesia to decrease and threatened extinction. However, only limited scientific data is available regarding the grouper in Indonesia, including their identification. In most fish landing sites across Indonesia, the groupers are morphologically identified and recorded as "kerapu" to replace their scientific species names. Accurate species identification is essential in designing appropriate and sustainable management of fisheries resources. One of the tools that have been used in fish identification is DNA barcoding. In the last two decades, this molecular method has been applied to identify many fish groups globally, including grouper fish. This study reviewed the DNA barcoding approach in grouper identification in Indonesia based on the available literature.Keywords:DNA barcodingGrouperMolecular TaxonomyFisheriesIndonesia

Kriopreservasi sperma ikan kawan Poropontius tawarensis menggunakan Dimetil sulfoxida (DMSO) Cut Ruhul Muthmainnah; Zainal A. Muchlisin; Kartini Eriani; Iwan Hasri; Nur Fadli; Abdullah A. Muhammadar
Depik Vol 8, No 3 (2019): December 2019
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13170/depik.8.3.15072

Abstract. Kawan fish (Poropuntius tawarensis) is an endemic fish found in Danau Laut Tawar, Central Aceh, Indonesia. This species has been threatened by ecological partubation, unfrindly fishing practices and pollution. Cryopreservation is one of the ways to maintain the presence of these fish. Cryoprotectant (CP) is a critical material in the cryopreservation and DMSO is a common CP used in cryopreservation. Hence, the aim of the present study was to determine the optimum DMSO concentration for kawan fish sperm. The completely randomized design with 6 treatments and 3 replications were used in this study. The tested treatment was the difference of DMSO concentration, namely; 0, 3%, 6%, 9%; 12%, and 15% DMSO was combined with 5% egg yolk. The ratio of sperm to diluent is 1: 20. The cryotubes containing diluented sperm were evaporated at 5 cm from the surface of liquid nitrogen for 10 min, then stored in a liquid nitrogen container at -1960C for 2 weeks, then thawed and analyzed for the quality. The results showed that fresh sperm of kawan fish had motility of 48.67%, pH 7, milky white, with moderate consistency. The assessment of mass movements shows that the sperm has good quality. The ANOVA test showed that the addition of DMSO in diluents gavee significant effect on sperm motility, fertility and hatchability rates of fish eggs (P 0.05). The highest percentage of sperm motility and fertilization rates of fish eggs were found at concentration of 6%, respectively with the value of 46.67% and 45.67%, respectively. The highest percentage of hatching rate was also found in similar concentration of DMSO with the value of 19.33%. %. The DNA integrity test using the electrophoresis gel method showed that there was damage to DNA fish sperm after freezing, the the lower damage was found at 9% and 12% DMSO. It is concluded that the optimum concentration of DMSO for kawan fish sperm is at 6% of DMSO. Key words: kawan fish (Poropuntius tawarensis), cryopreservation, DMSO, DNA integrity Abstrak. Ikan kawan (Poropuntius tawarensis) merupakan ikan endemik yang terdapat di Danau Laut Tawar, Aceh Tengah, Indonesia. Menurut IUCN (International Union for Conservation of Nature), ikan ini termasuk ikan yang terancam punah oleh sebab kerusakan lingkungan, penangkapan tidak ramah lingkungan dan polusi. Salah satu cara untuk menjaga keberadaan ikan tersebut adalah dengan penerapan metode kriopreservasi sperma. Oleh karena itu, penelitian ini bertujuan untuk menentukan konsentrasi DMSO optimum dan melihat kerusakan DNA yang terjadi pada sperma ikan kawan(Poropontius tawarensis) pasca pembekuan.Metode yang digunakan dalam penelitian ini adalah Rancangan Acak Lengkap (RAL) dengan 6 perlakuan dan 3 ulangan.Perlakuan yang diuji adalah perbedaan konsentrasi DMSO dengan konsentrasi 0; 3%; 6%; 9%; 12% dan 15%.DMSO tersebut dikombinasikan dengan 5% kuning telur. Perbandingan sperma dengan pengencer adalah 1 : 20. Semua cryotube yang berisi sperma dan pengencer diuapkan pada jarak 5 cm dari permukaan nitrogen cair selama 10 menit, selanjutnya, disimpan dalam kontainer nitrogen cair bersuhu -1960C untuk disimpan selama 2 minggu. Hasil penelitian menunjukkan bahwa sperma segar ikan kawan memiliki nilai motilitas sebesar 48,67%, pH 7, berwarna putih susu, dengan konsistensi sedang. Penilaian gerakan massa menujukkan bahwa sperma tersebut berkualitas baik. Hasil uji ANOVA menunjukkan bahwa penambahan DMSO dalam pengencer berpengaruh nyata terhadap motilitas, fertilitas dan daya tetas telur ikan kawan (Poropontius tawarensis) (P0,05) setelah pembekuan. Selanjutnya, uji lanjut Duncan menunjukkan bahwa persentase motilitas sperma dan pembuahan telur ikan kawan tertinggi terdapat pada penambahan DMSO dengan konsentrasi 6%, masing-masing sebesar 46,67% dan 45,67%. Persentase penetasan telur tertinggi juga dijumpai pada perlakuan 6% DMSO, dengan nilai 19,33%. Hasil uji integritas DNA menggunakan metode elektrofresis gel menunjukkan bahwa terdapat kerusakan pada DNA sperma ikan pasca pembekuan, Kerusakan yang terendah terdapat pada konsentrasi DMSO 9% dan 12%. Namun secara umum, disimpulkan bahwa konsentrasi optimum untuk kriopreservasi ikan kawan adalah 6% DMSO.Kata kunci: ikan kawan (Poropuntius tawarensis), kriopreservasi, DMSO, integritas DNA

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