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All Journal Jurnal Akuakultur Indonesia Jurnal Natur Indonesia BERITA BIOLOGI

Estu Nugroho

Pusat Penelitian dan Pengembangan Perikanan Budidaya

Author-ID : 333255

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Chemistry

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KARAKTERISASI GENETIK IKAN LELE DUMBO BERDASARKAN MARKER RAPD FINGERPRINTING [Genetic Characterization of African Catfish Revealed by RAPD Fingerprinting Markers] Nugroho, Estu; Putera, Sabara
BERITA BIOLOGI Vol 17, No 1 (2018)
Publisher : Research Center for Biology-Indonesian Institute of Sciences

African catfish, namely lele dumbo, is an economically important fresh water fish in Nusa Tenggara Barat. There are three strains of African catfish that are well distributed among farmers. Genetic information of three strain catfish stocks is needed in order to sustain their development program. Genetic variations of the three strains of catfish, i.e. Sangkuriang, Masamo, Paiton has been evaluated using RAPD markers. DNA genome was extracted using phenol-chloroform methods. DNA was amplified using 20 primers (OPA 1 â 20). The results showed that three of the 20 primers have good amplification products. There was no significant genetic differences among three strains of catfish analyzed (P>0.05). Genetic variation of three African catfish stocks ranges from low to middle value. The highest genetic variation is found in strain Masamo with heterozygosity of 0.273 (with 70% polymorphism loci), followed by Sangkuriang 0.189 (60%) and Paiton0.147 (40%). Hybrid candidates of Masamo-Sangkuriang have eterozygosity ranges between 0.256 - 0.306 (with 66.6 7 â 73.77% polymorphism loci). Strain Masamo and Paiton has more close genetic relationship than among the both and Sangkuriang.

HERITABILITAS DAN PEROLEHAN GENETIK PADA BOBOT IKAN NILA HASIL SELEKSI [Heritability and Genetic gain on Weight of Tilapia Resulted Frown Individual Selection] Nugroho, Estu; Mayadi, Lalu; Budileksono, Sigit
BERITA BIOLOGI Vol 16, No 2 (2017)
Publisher : Research Center for Biology-Indonesian Institute of Sciences

Directional-individual selection on tilapia growth had been conducted in West Nusa Tenggara Province. The base population had been constructed through di allele crossing between six tilapia strains i.e. NIRWANA, BEST, SULTANA, Citralada, JATIMBULAN and White Sleman. A total of 150 brood stock pairs were used for spawning with the ratio of female and male parent 1: 1 in net with size of 1x1x1 m. Two hundred larvae Â produced from each spawn pairs were communally reared in a pond for three months. Directional-individual selection was conducted at the size of > 50 grams. The cut-off for minimum selected fish was based on the lowest individual weight of 10% top population. The average value of heritability on body weight was 0.251 for males and 0.258 for the female population. The total value of genetic gain of body weight for four generations was 51.68% for male population and 56.78% for the female population.

KERAGAMAN GENETIK POPULASI IKAN NILA {Oreochromis niloticus) DALAM PROGRAM SELEKSI BERDASARKAN RAPD Arifin, Otong Zenal; Nugroho, Estu; Gustiano, Rudhy
BERITA BIOLOGI Vol 8, No 6 (2007)
Publisher : Research Center for Biology-Indonesian Institute of Sciences

Objectives of the study was to discover genetic variability and genetic relationship of paternal half sib population of nile tilapia (Oreochromis niloticus) under Selection Program Scheme at Research Institute for Freshwater Aquaculture, in Bogor, West Java.Four populations from unrelated selected breeders were observed for genetic variability using RAPD. The analysis of amplification from each locus and fragments were used to estimate DNA polymorphisms, heterozygosity, fst and genetic distance.The range of heterozygosity of four examined populations was 0.1760-0.2168 with level polymorphic between 47.66% and 64.86%.The highest heterozygosity and polymorphic was on population 1 and the lowest one was on population 2. Fst test showed significance among the populations. The closest relationship was between population 1 and 4 (0.1978) and the furthest was population 2 and 3 (0.3289).

Karakterisasi Morfologi Ikan Bujuk (Channa lucius) pada Perairan Danau Singkarak Sumatera Barat, Rawa Banjiran Tanjung Jabung Timur Jambi dan Rawa Banjiran Kampar Riau Azrita, Azrita; Syandri, Hafrijal; Dahelmi, Dahelmi; Syaifullah, Syaifullah; Nugroho, Estu
Jurnal Natur Indonesia Vol 15, No 1 (2013)
Publisher : Lembaga Penelitian dan Pengabdian kepada Masyarakat Universitas Riau

Overfishing, the use of unfriendly-environmental fishing gears, changes of environmental water conditions and diversity of habitats are threaten the continuity of Bujuk fish (Channa lucius) and generate the morphologycal diversity. Consequently, appropriate conservation efforts are needed to preserve the fish. The first phase of these efforts were done through morphological approach. The research was held in 2010 in Singkarak Lake West Sumatera Province, in floodplain, Pematang sub-district Lindung Mendahara Ulu Regency East Tanjung Jabung, Province of Jambi, and in floodplain Mentulik Regency Kampar Kiri Hilir Riau Province. The aims of the research were to analyze the morphological characteristic of the fish with Principal Component Analysis (PCA) and to determine the range of similarity between populations of the fish. Determination of the location of fish sampling was conducted by proposive sampling in which there were 30 samples for every research location. The measurement of the specimen was done by digital calipers on the left of the body, at 4 meristic characters and 19 morphometric characters. The data obtained were analyzed by One Way ANOVA and principal component analysis using Statistical software version 13. The results showed that based on the analysis of morphological characteristics of bujuk fish, populations that exist in Lake Singkarak were different from those of Pematang Lindung floodplain sub-district Mendahara Ulu Regency East Tanjung Jabung Jambi Province and Mentulik Regency floodplain Kampar Kiri Hilir Province Riau. The meristic difference was on the number of scales along the lateral line with a value of 0.783. While the main difference on morphometric characters were the snout length with a value of 0.848, and length of upper jaw with a value of 0.847. Thus, the study showed that the fish was isolated geographically into two groups, which were Jambi-Riau population and Singkarak Lake population.

Genetic Characterization of Domesticated F1 Generation in Humpback Grouper (Cromileptes altivelis) Aliah, Ratu Siti; Wahidah, .; Sumantadinata, K.; Nugroho, Estu; Carman, O.
Jurnal Akuakultur Indonesia Vol. 5 No. 1 (2006): Jurnal Akuakultur Indonesia
Publisher : Indonesian Society of Scientific Aquaculture (ISSA)

First generation (F1) of hatchery produced humpback grouper (Cromileptes altivelis) has been characterized genetically in order to serve the information of their status in related to their breeding strategy. PCR-RFLP method was used to detect the variation of mtDNA D-loop region of F1 population at BBPBL Lampung and BBAP Situbondo. The result of study showed that reducing of haplotype diversity had been arised from broodstock (0.8548) to F1 generation population (0.7473; 0.7273; and 0.6947, respectively). Genetic divergence that had found between population BBPBL Lampung and BBAP Situbondo make it possible to do outbreeding in order to get its heterosis's effect. Keywords: mtDNA, haplotype diversity, genetic differentiation, Cromileptes altivelis ABSTRAK Ikan kerapu tikus (Cromileptes altivelis) generasi pertama (F1) hasil domestikasi di hatchery telah dikarakterisasi secara genetik untuk menyediakan informasi status sehubungan dengan program pemuliaannya. Metode PCR-RFLP digunakan untuk mendeteksi variasi sekuens D-loop mtDNA ikan kerapu tikus F1 yang diproduksi di BBPBL Lampung dan BBAP Situbondo. Hasil penelitian menunjukkan bahwa telah terjadi penurunan keragaman haplotipe dari induk (0,8548) ke populasi generasi F1 (masing-masing 0,7473; 0,7273; dan 0,6947). Adanya keragaman genetik antara populasi ikan kerapu tikus di BBPBL dan BBAP Situbondo memungkinkan dilakukannya outbreeding untuk mendapatkan efek heterosis. Kata kunci: mtDNA, keragaman haplotipe, diferensiasi genetik, Cromileptes altivelis

Co-Authors . Wahidah Azrita, Azrita Budileksono, Sigit Dahelmi Dahelmi Hafrijal Syandri Ida Ayu Putu Sri Widnyani K. Sumantadinata Mayadi, Lalu O. Carman Otong Zenal Arifin Putera, Sabara Ratu Siti Aliah Rudhy Gustiano

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