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All Journal Biota: Jurnal Ilmiah Ilmu-Ilmu Hayati Jurnal Pengabdian Masyarakat MIPA dan Pendidikan MIPA JURNAL BIOLOGI PAPUA Quagga: Jurnal Pendidikan dan Biologi Bakti Hayati Novae Giunea Jurnal Biologi

Runtuboi, Dirk Yanes

Universitas Cenderawasih

Author-ID : 5961179

Agriculture, Biological Sciences & Forestry Humanities Biochemistry, Genetics & Molecular Biology Education Environmental Science Health Professions Immunology & microbiology Materials Science & Nanotechnology Social Sciences Other

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Uji Sensitivitas Neisseria gonorrhoeae terhadap Beberapa Antibiotik Pada Wanita Penjaja Seks (WPS) di Lokalisasi Tanjung Elmo Kabupaten Jayapura Hamid Hamid; Dirk Runtuboi; Lucky V. Waworuntu
Jurnal Biologi Papua Vol 6, No 2 (2014)
Publisher : Jurusan Biologi FMIPA Universitas Cenderawasih

The purpose of this research is to study the sensitivity of quinolon antibiotic group against Neisseria gonorrhea. The bacteria which were found from endoservic vaginal from local sexual worker of Tanjung Elmo, Jayapura were isolated using neck duck sterile. This study was done on Health Laboratory of Jayapura from June to September 2013. The swab was planted on Thayer-Martin medium and incubated at 37 ºC for 2 x 24 hours. The grown colonies were sub-cultured to get the specific colonies. The bacterial identification is done by some rapid test including examination of grams, oxidation tests, biochemical tests andsensitivitytest. The result showed that there were six (6) specimen of 52 samples positively contained N. gonorrhea. The sensitivity test of quinolone group indicated that the levofloxacin, cefixime, ciprofoxacin, ofloxacin, azytromisin have the sensivity of 83.3%, 66.6%, 66.6%, 66.6% and 50% respectively.Key words: Neisseria gonorrhea, female commercial sex workers, antibiotics

Genetic Diversity of Merozoite Surface Protein 2 (MSP2) Plasmodium falciparum Clinical Isolate in Wamena General Hospital Dirk Y.P. Runtuboi; Rosye H.R. Tanjung; Yulius Sarungu; Meidy J. Imbiri; Irma A. Resmol; Ign. Joko Suyono
Jurnal Biologi Papua Vol 12, No 2 (2020)
Publisher : Jurusan Biologi FMIPA Universitas Cenderawasih

The genetic diversity of typical clinical isolated Plasmodium falciparum in the malaria population varies greatly, especially at the location where malaria disease were recorded at high incidence rate. MSP2 is known as glycoprotein expressed on the surface of merozoites, which is an antigenic protein and has a potential to act as vaccine candidate for malaria. The MSP2 gene has two main allelic groups called FC27 and 3D7/IC. Block 3 from MSP2 gene is the most polymorphic to describe the diversity of parasite populations. The P. falciparum parasite population is often characterized by wide genetic diversity in areas of high transmission intensity. Therefore, the study on P. falciparum diversity is useful to describe the level of malaria transmission. The study of genetic diversity focused on clinical isolated species at Wamena General Hospital was aimed to determine the presence of the MSP2 gene, variety of MSP2 gene allele and the dominant frequency of the MSP2 gene allele. This research has been carried out from March 2018 to February 2019 using a cross sectional approach. The research sample was taken and prepared from Wamena Regional Hospital and followed by the analyzing of DNA isolation, PCR, electrophoresis of the research samples was done at the genetic science laboratory in Jakarta, Indonesia. The samples studied were patients who met the inclusion criteria, namely a single P. falciparum infection with an asexual parasite density >1000 parasites/µl or >3+ (1-10 P/Lp), and were agreed to become respondents by signing an informed consent. A total of 26 clinical isolates of P. falciparum were isolated with the MSP2 gene distribution on the FC27 allele with the highest as many as 25 samples (96.2%), 22 samples (84.6%) of the 3D7 / IC allele while the mixture of the two alleles was 22 samples (84.6%). From a total of 26 samples, there were samples with the male gender category counted for 77.3% and female 41%. The results of the identification of clinical isolated P. falciparum at Wamena Hospital with a total of 26 samples were found in productive age, between 15-34 years with a single allele (95.8%), while 23 cases and mix (both alleles 87.5%) about 21 cases, meanwhile in cases of before-productive age, in which ages were 12 and 14 years of age with a single allele 100% (FC27) 2 cases and 50% (3D7/IC) found to be 1 case, The mixture of the two alleles is 50% was only 1 case and there was no sample at non-productive age observed. Key words: Malaria; MSP-2; P. falciparum; Wamena

Uji Resistensi Antibiotik dan Deteksi Gen Plasmid IncHI1 Salmonella typhi Isolat Jayapura Rini S. Kelanit; Dirk Y.P. Runtuboi; Tri Gunaedi
Jurnal Biologi Papua Vol 8, No 1 (2016)
Publisher : Jurusan Biologi FMIPA Universitas Cenderawasih

The research on antibiotic resistance test and detection of gene Plasmid IncHI1 1 Salmonella typhi isolates of Jayapura have been conducted in January to August 2015. The purpose of this study is to determine antibiotic resistance patterns and detect the presence ofS. typhi IncHI1 plasmid genes in Jayapura.The method of study was the laboratory analytic where ninety two samples were culture tested and S. typhi identified was tested using disc diffusion method of Kirby Bouer to see any resistance toward 18 antibiotics. Plasmids of S. typhi then were extracted using method of Kado-Liu. To ensure the presence of S. typhi DNA, the testof flagellin gen detection had been done using Nested PCR followed by gene Inchi1 S. typhi detection. The results showed that among 8 isolates of S. typhi, there has been a Multi Drug Resistant (MDR) of 7 samples (87.5%) with varying resistance patterns where the most resistant antibiotics are Amoxicillin 100% (8 isolates), Cefazolin 75% (6 isolates), Ampicillin 75% (6 isolates), Trimethoprim–Sulfamethoksazol 62.5% (5 isolates), Amikacin 62.5% (5 isolates), Gentamicin 50% (4 isolates) and Ampisillin–Sulbactam 50% (4 isolates). The most sensitive antibiotics is Meropenem is 87.5% (7 isolates). PCR test results showed that there were no genes of IncHI1 S. typhi in Jayapura.Key words: Salmonella typhi, gen IncHI1, antibiotic resistance, Jayapura.

Studi Kesesuaian Lahan Budidaya Rumput Laut Berdasarkan Parameter Biofisik Perairan di Yensawai Distrik Batanta Utara Kabupaten Raja Ampat Dirk Runtuboi; Yunus P. Paulungan; Tri Gunaedi
Jurnal Biologi Papua Vol 6, No 1 (2014)
Publisher : Jurusan Biologi FMIPA Universitas Cenderawasih

One of the potential areas for developing mariculture in Raja Ampat Regency is Yensawai. This research aim to determine biophysical parameter for seaweed culture. The parameters were proped in to four classes; high suitable, suitble, currently not suitable and permanently not suitable. The result showed that the cultivation area size were 14 hectares, where Ramon 1 and Ramon 2 Stations were categorized as currently not suitable, while Warkabas and Metabai stations were grouped into suitable for seawed cultivation.Key words: analysis of suitability, seaweed cultivation, Yensawai

Karakterisasi Bakteri Bacillus thuringiensis asal Hutan Lindung Kampus Uncen Jayapura, serta Deteksi Toksisitasnya terhadap Larva Nyamuk Anopheles Daniel Lantang; Dirk Y.P. Runtuboi
Jurnal Biologi Papua Vol 4, No 1 (2012)
Publisher : Jurusan Biologi FMIPA Universitas Cenderawasih

Study of isolate characterization of Bacillus thuringiensis Berliner collected from soil was done at UNCEN Campus. The aims of the study were to explore the local isolate of B. thuringiensis and to study the toxicity of the isolates on larvae of Anopheles as a vector of malaria and filariasis deseases in Papua. Data was analized by Hadioetomo & Rusmana method (1977). The results showed that 383 colonies are relatively closed to B. thuringiensis whereas 290 of them are indicated as local isolates of B. thuringiensis. Based on toxicity detection on larvae of Anopheles found that 19 isolates have toxicities levels 50% or more. Among the 19 isolates 3 of them has 80%, 85% and 90% toxicity levels separately.Key words: Characterization, local isolate, B. thuringiensis, toxicity, and soil.

Bakteri Penyebab Infeksi Nosokomial Pada Alat Kesehatan dan Udara di Ruang Unit Gawat Darurat RSUD Abepura, Kota Jayapura Herlando Sinaga; Dirk Y.P. Runtuboi; Lisye I. Zebua
Jurnal Biologi Papua Vol 6, No 2 (2014)
Publisher : Jurusan Biologi FMIPA Universitas Cenderawasih

Nosocomial infection is a health care problem in hospital worldwide. Problem, that appeared may aggravate existing disease, even cause death. Nosocomial infection can be defined as an infection acquired or occurring in hospital. The aimed of study was to determinespecies of bacteria causing nosocomial infection on medical equipment and air sampling in Accident and Emergency Room at Jayapura Hospital. This research was conducted at the Regional Health Laboratory (LABKESDA) Jayapura. The result showed that there were 13 species of bacteria found and there were 5 species of Staphylococcus cohnii, Klebsiella spp., Serratia marcescens, Staphylococcus haemolyticus, and Streptococcus spp.in the medical equipments at Emergency Room. Moreover, in air sampling of emergency room was founded 13 species of bacteria namely Staphylococcus haemolyticus (14%), Klebsiella spp (12%), Ser. marcescens (12%), E. Coli (12%), Sta. aureus (11%), Streptococcus spp (11%), Citrobacter sp (8%), Enterobacter cloacae (8%), Sta. cohnii (4%), Pneumococcus 2%), Proteus spp. (2%), Sta. epidermidis (2%), and Sta. warneri (2%).Key words: Nosocomial infections, health equipments, air, hospital.

Aktivitas Antibakteri Ekstrak Etanol Daun Gatal (Laportea aestuans (L.) Chew) Eva S. Simaremare; Agustina Ruban; Dirk Y.P. Runtuboi
Jurnal Biologi Papua Vol 9, No 1 (2017)
Publisher : Jurusan Biologi FMIPA Universitas Cenderawasih

Daun gatal (Laportea aestuans) is an indigenous plant of Papua hich has been widely used for pain relief as traditional medication in the local community. The leaves were just picked then treated to cure for painful body. This treatment are giving itchy sense as an indication that medication is working on the body as local people assumed. The aim of the study was to determine the activity of antibacteria of daun gatal against Escherichia coli, Staphylococcus aureus and Salmonella typhi. Samples of daun gatal were collected from Biak Numfor Papua. The methods are started with filtering of daun gatal using 100 mash and extracted with ethanol. Extract was made in 250, 500, 750, 1000 ppm, with chloramphenicol as a control positive, while the test of antibacterial activity was done by disc diffusion method. The results showed that daun gatal has antibacterial activity against E. coli, S. aureus and S. typhi. Daun gatal extract (L. aestuans) is effective in inhibiting the growth of bacterias with zone inhibition of 1000 ppm extracts which were 8.55 mm (E. coli), 9.02 mm (S. typhi), dan 9.37 mm (S. aureus). Key words: Antibacteria, E. coli, L. aestuans, S. aureus and S. typhi.

Isolasi dan Identifikasi Bakteri Termofilik dari Sumber Air Panas di Moso Distrik Muara Tami Kota Jayapura Provinsi Papua Dirk Y.P. Runtuboi; Tri Gunaedi; Maria Simonapendi; Nadya N.L. Pakpahan
Jurnal Biologi Papua Vol 10, No 2 (2018)
Publisher : Jurusan Biologi FMIPA Universitas Cenderawasih

Thermophilic bacteria are bacteria that are able to survive in environmental conditions with high temperatures. Thermophilic bacteria are one of the important sources of thermostable enzymes that can be isolated from geothermal environments such as hot springs with temperatures ranging from 50–80 oC. Aims of the study to isolate and identify local isolates of thermophilic bacteria from hot springs in Moso Muara Tami District, Papua. The results showed that 7 isolates (A1, A2, A3, A4, B1, B2, and B3) that were isolated and identified based on phenotypic characters were included in the genus Bacillus. Key words: Thermophilic, characterization, isolation, identification, phenotypic.

Uji Efektivitas Jamur Beauveria bassiana dan Waktu Aplikasi Terhadap Hama Spodoptera litura Pada Tanaman Sawi Hijau (Brassica juncea) Alum Turnip; Dirk Y.P. Runtuboi; Daniel Lantang
Jurnal Biologi Papua Vol 10, No 1 (2018)
Publisher : Jurusan Biologi FMIPA Universitas Cenderawasih

Beauveria bassiana is one type of entomopathogenic fungi that can be used as a biopesticide. Papua province is rich in natural contents, as well as B. bassiana fungus isolated from soil rhizofir banana plants at the location Housing Cenderawasih University Lecturer Jayapura, Perumnas III Waena, Heram District, Jayapura, Papua Province. Local isolates of B. bassiana fungus reproduced in the Laboratory of Microbiology, Cenderawasih University Jayapura. This study aimed to get to get a concentration of B. bassiana fungus that effectively kill pests Spodoptera litura mustard greens (Brassica juncea), the time interval applications (morning, afternoon, and evening) B. bassiana fungus that effectively kill pests S. litura the mustard greens (B. juncea) and knowing the difference effectiveness of B. bassiana fungus concentration and application time (morning, afternoon, and evening) to pests S. litura green mustard (B. juncea) as well as the interaction fungus B. bassiana and application time (morning, afternoon and evening) to pests S. litura green mustard (B. juncea) with Randomized Complete Design Factorial (RAK-F) which consists of two factors: the concentration of fungi B. bassiana and time of application. The results obtained that the concentration of the fungus B. bassiana were effectively kill pests S. litura is a concentration of 1 % and 1.5 %. The time interval B. bassiana fungus that effectively kill pests S. litura is morning, afternoon and evening. Differences in the effectiveness of the fungus B. bassiana and applications in the time interval kill pests S. litura is a concentration of 0.5 % and 1.5 % in the morning, afternoon, and evening. Interval time of application of the interactions of fungi B. bassiana in killing pests S. litura is an afternoon with a concentration of 1.5 % on day 5 by 5 %, the 8th day amounted to 17.5 %, the 11th day amounted to 32.5 % and on day-14 amounted to 42.5 %. Key words: B. bassiana, B. juncea, effectiveness, time applications.

Konservasi dan Kondisi Terumbu Karang di Kampung Saporkren Distrik Waigeo Selatan, Kabupaten Raja Ampat, Papua Barat Marthen L.R. Bartholomeus; Dirk Y.P. Runtuboi; Rosye H.R. Tanjung
Jurnal Biologi Papua Vol 5, No 2 (2013)
Publisher : Jurusan Biologi FMIPA Universitas Cenderawasih

Conservation effort and knowledge on coral reef ecosystem are necessary to protect marine ecosystem. Coral reef ecosystem is very important to support marine biota especially fishes and benthos. The presence of coral reef indirectly support local people income, therefore is is necessary to conserve coral reef ecosystem. District of South Waigeo is one of tourist area as well as preserve area in Raja Ampat Regency of Papua Barat Province. The aim of this study is to identify the current condition of coral reef in Saporken Village of South waigeo District. Data were collected by survey method using coral reefs Point intercept transect method, observation and interviews to determine the social, economic and cultural impact., and measures taken to manage coral reef management in village Saporkren Marine Protected Areas. The results showed that knowledge Saporkren Village community, the conservation community knows about how destructive such arrests are not carried out the bombing, while the traditional way people work is local wisdom. Condition of coral cover in the village of Marine Protected Areas Saporkren in good condition (live coral cover=51%) and very good water quality, flow velocity at high tide ranged from 4.25 to 22.3 cm/sec and the flow velocity at low tide over small ranging from 5.07 to 19.60 cm/sec, salinity ranged from 32–35‰ and wave height ranged from 0.75 m. Based on the results of this study concluded that: Village community know Saporkren conservation activities of local government programs, and the traditional way to preserve coral reef still implemented.Key words: Conservation, coral reefs, Saporkren village, Raja Ampat.

Co-Authors Aditya Krishar Karim Agnes E. Maryuni Agustina Ruban Ajeng M.P. Lestari Alum Turnip Aprillia D.F. Yapen Bonifasia Elita Bharanti Daniel Lantang Daniel Lantang Dirk Orboi Dita A. Khotimah Eka Febri Rahmawati Hamid Hamid Herlando Sinaga Ign. Joko Suyono Ign. Joko Suyono Ign. Joko Suyono Irma A. Resmol Ivon Ayomi, Ivon Lisye I. Zebua Lucky V. Waworuntu Maria Simonapendi Marthen L.R. Bartholomeus Meidy J. Imbiri Nadya N.L. Pakpahan Petra Pattipeilohy Rahayu Samalo Rini S. Kelanit Rosdiana Howay Rosye H.R. Tanjung Sarce M. Sasari Sepdianti Pebiola Sigit Raharjo Supeni Sufaati Tiara A. Nadapdap Tri Gunaedi Tri Gunaedi Tri Gunaedi Tri Gunaedi Verena Agustini Vinexa Alwendzani Winda A. Aritonang Yulius Sarungu Yunus Kulle Yunus P. Paulungan

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