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All Journal Biosfer: Jurnal Tadris Biologi Biocaster : Jurnal Kajian Biologi Jurnal Pengabdian Sosial Berkala Ilmiah Biologi Berita Biologi
Zahro, Shofiyyatuz
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Religion Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Computer Science & IT Economics, Econometrics & Finance Education Immunology & microbiology Law, Crime, Criminology & Criminal Justice Medicine & Pharmacology Public Health Social Sciences Veterinary Other

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Biodiversity of Banana Trees (Musa sp.) in Purwodadi Botanical Gardens Zahro, Shofiyyatuz; Faridotul Khoiriyah, Lina; Dyana, Hanif; Haikal, Ahmad; Febrianai, Asri
Berkala Ilmiah Biologi Vol 15 No 1 (2024)
Publisher : Fakultas Biologi Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/bib.v15i1.6445

Abstract

Banana is a fruit that is often found in everyday life. This fruit is a daily consumption to meet daily nutritional needs. Indonesia has approximately 200 types of bananas scattered throughout the island. Diversity of banana trees (Musa sp.) in an effort to conserve Indonesian plants that live in lowland forests by carrying out plant exploration and collection activities. This research was conducted at the Purwodadi Botanical Gardens (KRP) with the aim of knowing the collection of banana trees (Musa sp.) in KRP. The method used is the roaming method with observation data collection. The results showed that there were 44 species of banana trees (Musa sp.) found alive, including the wild species with seeds Musa acuminate Colla and Musa balbisiana Colla. The species found consisted of 6 kinds of cultivar genome groups that had different characteristics. Banana tree cultivation was developed because it has many benefits and nutritional content for health.
Sosialisasi dan Pembuatan Lubang Biopori Sebagai Resapan Air dan Komposter Limbah Organik Kampung Malon Gunungpati Syaifudin, Andang; Zahro, Shofiyyatuz; Anjani, Rizki Wulan; Agustine, Rizki; Ramadhani, Novianisa; Afifah, Nurul; Oktavia, Carerina; Dalimunthe, Dayinta Azka Failasufa; Widyasari, Ika Layli
Jurnal Pengabdian Sosial Vol. 1 No. 3 (2024): Januari
Publisher : PT. Amirul Bangun Bangsa

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.59837/mkw9x735

Abstract

Biopori merupakan lubang- lubang di dalam tanah yang tercipta akibat bermacam akitifitas organisma di dalamnya, semacam cacing, akar rambat tumbuhan, rayap serta fauna tanah yang lain. Kegiatan sosialisasi dan pelatihan teknis pembuatan lubang resapan biopori ini dilakukan di Kampung Malon dengan tujuan untuk memberikan pengetahuan tentang manfaat Lubang Resapan Biopori (LRB) dan memberikan pengetahuan cara pembuatan LRB. Pelaksanaan Sosialisasi Biopori dilaksanakan dengan metode seminar (penyuluhan) dan praktek. Berdasarkan hasil sosialisasi dibuatlah lubang biopori di Kampung Malon sebanyak 30 titik di beberapa lokasi. Pembuatan biopori ini diharapkan mampu menjadi solusi untuk mengurangi limbah organik yang biasanya ikut dibakar bersamaan dengan anorganik.
Comparison of the Potential of Mangrove Forests as an Estimate of Carbon Stocks : A Review Zahro, Shofiyyatuz; Chika, Syifara
Biocaster : Jurnal Kajian Biologi Vol. 4 No. 4 (2024): October
Publisher : Lembaga Pendidikan, Penelitian, dan Pengabdian Kamandanu

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.36312/biocaster.v4i4.312

Abstract

Global warming is an increase in carbon dioxide gas (CO2) and other gases in the earth's atmosphere, which will make the earth's atmosphere retain more heat coming from the sun. This study aimed to determine the highest carbon stock ratio from various areas with mangrove forest areas. This research was conducted using the grid route method by collecting data from a literature study from different locations in the mangrove forest. The research results obtained that the highest average carbon stock in various regions of Indonesia which has the highest mangrove forest conservation is the Mangrove Area in Pasar Banggi Rembang Village of 737.2 tons/ha with three stations whose species names consist of Rhizophora apiculata, Rhizophora stylosa, and Rhizophora mucronata. High and low carbon content, density, and mangrove species in mangrove leaf litter were influenced by the rate of litter production. This production rate will later affect the high low carbon content in mangrove leaf litter.
Short Notes on the Leaf Architecture and Morphometry of Syzygium spp. Leaves from the Living Collections of Bogor Botanic Gardens Zahro, Shofiyyatuz; Wahidah, Baiq Farhatul; Hariri, Muhammad Rifqi
Biosfer: Jurnal Tadris Biologi Vol 14 No 2 (2023): Biosfer: Jurnal Tadris Biologi
Publisher : UNIVERSITAS ISLAM NEGERI RADEN INTAN LAMPUNG

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24042/biosfer.v14i2.18128

Abstract

Studies of leaf architecture and morphometry in Syzygium spp. are investigated. Seven species of Syzygium are taken for the study with additional Psidium guineense Sw. used as comparison. The seven species include Syzygium urceolatum subsp. palembanicum (Miq.) P.S.Ashton, Syzygium tinombalum Sunarti, Syzygium sexangulatum (Miq.) Amshoff, Syzygium hirtum (Korth.) Merr. & L.M. Perry, Syzygium boerlagei (Merr.) Govaerts, Syzygium racemosum (Blume) DC., and Syzygium claviflorum (Roxb.) Wall ex Steud. A comprehensive description of leaf architecture for the studied taxa was provided including leaf type, laminar shape, leaf attachment, laminar length, laminar width, petiole, leaf margin, apex shape, base shape, leaf color, and laminar symmetry. The pattern showed primary vein framework, major secondary spacing, major secondary angle, major secondary vein framework, and tertiary veins. Taxonomically significant leaf features of examined taxa showed great diversity in leaf attachment opposite, primary vein framework pinnate, and major secondary angle smoothly decreasing towards base.ABSTRAK: Kajian arsitektur daun dan morfometri Syzygium spp. diamati dan dilaporkan. Tujuh spesies Syzygium digunakan dan satu spesies Psidium guineense Sw. sebagai pembanding. Jenis Syzygium yang diamati terdiri dari Syzygium urceolatum subsp. palembanicum (Miq.) P.S.Ashton, Syzygium tinombalum Sunarti, Syzygium sexangulatum (Miq.) Amshoff, Syzygium hirtum (Korth.) Merr. & L.M. Perry, Syzygium boerlagei (Merr. Govaerts), Syzygium racemosum (Bl) DC., dan Syzygium claviflorum (Roxb.) Wall ex Steud. Deskripsi arsitektur daun yang diamati mencakup ciri tipe daun, bentuk helaian, letak daun, panjang helaian daun, lebar helaian daun, tangkai daun, tepi daun, ujung daun, pangkal daun, warna permukaan daun, dan simetri helaian daun. Pola venasi menunjukkan primary vein framework, major secondary spacing, major secondary angle, major secondary vein framework, dan tertiary veins. Ciri dengan nilai signifikan ditemukan pada letak daun berhadapan, primary vein framework menyirip, dan sudut sekunder utama yang secara halus berkurang menuju dasar.
An In Silico Approach for Evaluation of ITS, rbcL, and psbA-trnH for DNA Barcoding of Eugenia spp. Chika, Syifara; Zahro, Shofiyyatuz
Biosfer: Jurnal Tadris Biologi Vol 15 No 1 (2024): Biosfer: Jurnal Tadris Biologi
Publisher : UNIVERSITAS ISLAM NEGERI RADEN INTAN LAMPUNG

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24042/biosfer.v15i1.21064

Abstract

The genus Eugenia is known to be complex with intricate synonyms and taxonomy, and morphological identification is often unreliable due to overlapping characteristics and environmental influences, particularly in the flowers. DNA barcoding provides a way around this problem, as it can identify specimens using very short gene sequence fragments obtained from a small number of tissues.  The method used in this research is the in silico dengan menggunakan barcode DNA ITS, rbcL, dan psbA-trnH dari spesies Eugenia spp yang ditemukan di NCBI GenBank. The successful reconstruction of the phylogenetic tree from the three regions, including ITS, rbcL, and psbA-trnH shows that several species of Eugenia spp. are divided into 2 clades. Research successfully analyzed Eugenia plant relationship with using the ITS, rbcL, and psbA-trnH gene sequences in silico based shows that several species of Eugenia spp. are divided into 2 clades. In general, high bootstrap values are shown by phylogenetic trees based on the ITS region.ABSTRAK: Genus Eugenia dikenal kompleks dengan sinonim dan taksonomi yang rumit, serta identifikasi morfologis yang sering tidak dapat diandalkan karena karakter yang tumpang tindih dan dipengaruhi oleh lingkungan, terutama pada bagian bunga. Barcoding DNA memberikan jalan keluar dari masalah ini, karena dapat mengidentifikasi spesimen menggunakan fragmen urutan gen yang sangat pendek yang diperoleh dari sejumlah kecil jaringan. Metode yang digunakan dalam penelitian ini adalah in silico dengan menggunakan barcode DNA ITS, rbcL, dan psbA-trnH dari spesies Eugenia spp yang ditemukan di NCBI GenBank. Keberhasilan rekonstruksi pohon filogenetik dari tiga wilayah antara lain ITS, rbcL, dan psbA-trnH menunjukkan bahwa beberapa spesies Eugenia spp. dibagi menjadi 2 clade. Penelitian yang berhasil menganalisis hubungan tanaman Eugenia dengan menggunakan rangkaian gen ITS, rbcL, dan psbA-trnH secara silico menunjukkan bahwa beberapa spesies Eugenia spp. dibagi menjadi 2 clade. Secara umum nilai bootstrap yang tinggi ditunjukkan oleh pohon filogenetik berdasarkan wilayah ITS.
ASSESMENT OF THE DNA BARCODES CHARACTERISTIC AND EVALUATION OF PHYLOGENETIC RELATIONSHIP OF Castanopsis argentea (Blume) A. DC. Chika, Syifara; Zahro, Shofiyyatuz
Berita Biologi Vol 23 No 3 (2024): Berita Biologi
Publisher : BRIN Publishing (Penerbit BRIN)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.55981/berita_biologi.2024.5800

Abstract

Castanopsis, the third largest genus under Fagaceae, is widespread in tropical and subtropical areas in East and South Asia. This plant is one of the woody plants that has the potential to be developed because it is helpful for wildlife for nesting and is used in land reforestation activities. Based on data from the Red List of the International Union for the Conservation of Nature and Natural Resources (IUCN), it is reported that the Castanopsis argentea species is threatened with extinction. Research based on genetic aspects of this species is also rarely carried out. This research aims to conduct an in silico study and analyze the kinship relationships of Castanopsis argentea. The method used in this research is the in silico method, which takes Castanopsis argentea nucleotide data from NCBI in the matK region. Based on this research, the phylogenetic results show that the results of the phylogenetic tree reconstruction show that the matK region is divided into two ingroup clades and one outgroup. The matK region in Castanopsis argentea is highly conserved because it only has three genetic variations namely N282T, C285T, and C422A. In this study, the matK gene can group species from the same genus and separate species from different genus. This is in line with the results of the phylogenetic tree, which shows that members of the same genus successfully grouped into one clade. More research on DNA barcoding of Castanopsis argentea must be carried out and developed because more genetic data still needs to be collected at NCBI. The genetic data of a species is essential to research and is stored in NCBI's Genbank for genetic conservation purposes.
Co-Authors Agustine, Rizki Anjani, Rizki Wulan Baiq Farhatul Wahidah Chika, Syifara Dalimunthe, Dayinta Azka Failasufa Dyana, Hanif Faridotul Khoiriyah, Lina Febrianai, Asri Haikal, Ahmad Muhammad Afif Muhammad Rifqi Hariri Oktavia, Carerina Ramadhani, Novianisa Syaifudin, Andang Widyasari, Ika Layli