Biology, Medicine, & Natural Product Chemistry
Vol 15, No 1 (2026)

Prediction of Interaction and Stability of Bioactive Compounds from Acalypha indica L. with Acetylcholinesterase as Alzheimer’s Drug Candidates: A Docking and Molecular Dynamics Study

Lisa Savitri (Universitas Kadiri)
Kharisul Ihsan (Universitas Strada Indonesia)
Rochmad Krissanjaya (Universitas Kadiri)
Elfred Rinaldo Kasimo (Universitas Kadiri)



Article Info

Publish Date
25 May 2026

Abstract

Alzheimer’s disease remains one of the most challenging neurodegenerative disorders, with acetylcholinesterase (AChE) inhibition serving as a key therapeutic strategy. This study evaluated the interaction profiles and dynamic stability of bioactive compounds from Acalypha indica L. as potential AChE inhibitors using molecular docking and molecular dynamics simulations. Candidate compounds were screened for drug-likeness through SwissADME and toxicity predictions using ProTox-II. Docking results identified Compound A as the strongest binder, showing a favorable binding energy of -9.2 kcal/mol and forming stable interactions with catalytic and peripheral residues of AChE. A 100-ns molecular dynamics simulation demonstrated the stability of the protein-ligand complex, supported by consistent RMSD and radius of gyration values. Residue-level flexibility analysis revealed minimal fluctuations in the active site, and hydrogen-bond monitoring indicated persistent interactions throughout the simulation. MM-PBSA calculations yielded a binding free energy of -32.4 ± 3.1 kcal/mol, with van der Waals contributions dominating the interaction. These findings suggest that Compound A is a promising lead candidate for further experimental validation as an AChE inhibitor and may contribute to the development of new therapeutic agents for Alzheimer’s disease.

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Journal Info

Abbrev

BIOMEDICH

Publisher

Subject

Biochemistry, Genetics & Molecular Biology Medicine & Pharmacology Public Health

Description

BIOLOGY, MEDICINE, & NATURAL PRODUCT CHEMISTRY, this journal is published to attract and disseminate innovative and expert findings in the fields of plant, animal, and microorganism secondary metabolite, and also the effect of natural product on biological system as a reference source for ...