Indonesian Journal of Biotechnology
Vol 31, No 2 (2026)

Whole-genome sequencing of endophytic Bacillus cereus ELSZ6 isolated from Smilax zeylanica L. reveals antimicrobial potential against multidrug-resistant pathogens

Zuhri, Rozana (Unknown)
Retnaningrum, Endah (Unknown)
Widiyastuti, Yuli (Unknown)
Susidarti, Ratna Asmah (Unknown)



Article Info

Publish Date
30 Jun 2026

Abstract

The increasing global prevalence of multidrug-resistant (MDR) bacterial infections has intensified the search for new antibacterial agents from underexplored natural sources. Endophytic bacteria associated with medicinal plants are recognized as potential producers of bioactive secondary metabolites. This study aims to isolate and characterize antibacterial endophytic bacteria from Smilax zeylanica collected in Bukit Duabelas National Park, Jambi, Indonesia. Endophytic bacteria were isolated from roots, stems, leaves and rhizomes using a surface sterilization method, which was validated by a final rinse test which showed no microbial growth. Antibacterial activity was screened using a dual culture assay on Nutrient Agar against methicillin-resistant Staphylococcus aureus (MRSA) WS 29 and Escherichia coli RES 22-2020, followed by phenotypic and genomic characterization. A total of 45 endophytic bacterial strains were obtained, of which seven exhibited inhibitory activity against both pathogens. Strain ELSZ6 showed the strongest inhibition and was characterized as Gram-positive, rod-shaped, and endospore-forming. Whole genome sequencing identified the strain as Bacillus cereus (6.3 Mbp; 50× coverage). Genome mining using antiSMASH revealed several biosynthetic gene clusters associated with secondary metabolites, including bacillibactin, zwittermicin A and petrobactin. The findings indicate that strain ELSZ6 represents a potential candidate for further investigation as a source of antibacterial compounds for use against MDR bacteria.

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Journal Info

Abbrev

ijbiotech

Publisher

Subject

Biochemistry, Genetics & Molecular Biology Immunology & microbiology Materials Science & Nanotechnology

Description

The Indonesian Journal of Biotechnology (IJBiotech) is an open access, peer-reviewed, multidisciplinary journal dedicated to the publication of novel research in all aspects of biotechnology, with particular attention paid to the exploration and development of natural products derived from ...