Indonesian Journal of Chemical Science and Technology
Vol. 9 No. 2 (2026): JULY 2026

In Silico Evaluation of Nitrogen-Containing Tetrahydropyridine and Piperidine Metabolites Identified from Strobilanthes tonkinensis Lindau Leaves as Potential Antibacterial Agents

Hestia Hairima (Unknown)
Dwi Sapri Ramadhan (Universitas Negeri Medan)
Dian Wardana (Unknown)



Article Info

Publish Date
31 Jul 2026

Abstract

Strobilanthes tonkinensis Lindau (daun paris), a Southeast Asian aromatic herb, contains several nitrogen-containing piperidine and tetrahydropyridine (THP) metabolites identified by prior GC-MS profiling but not previously evaluated in silico. This study assessed the molecular docking interactions of four such metabolites, 2-propionyl-3,4,5,6-tetrahydropyridine (2-PTHP), 2-acetyl-3,4,5,6-tetrahydropyridine (2-ATHP), 2-(2-furyl)piperidine (2-FP), and 1-(piperidin-2-yl)propan-1-one (PPO) against two bacterial protein targets, FtsA (PDB: 3WT0) and DNA gyrase subunit B (GyrB; PDB: 6KZV), using AutoDock Vina, complemented by ADMET prediction via SwissADME and ProTox 3.0. All four compounds showed moderate binding affinities against FtsA (−5.7 to −5.9 kcal/mol) and GyrB (−5.2 to −6.0 kcal/mol), substantially weaker than the native co-crystallized ligands (−11.5 and −8.9 kcal/mol, respectively). 2-FP exhibited the strongest GyrB affinity (−6.0 kcal/mol) and partially reproduced the native ligand's catalytic-residue contacts (ASP73, ASN46), whereas PPO showed the most catalytically relevant FtsA interaction profile, engaging SER13, VAL211, and ASP210. Structure-activity comparison identified the presence of a piperidine NH (hydrogen bond donor) versus an imine nitrogen as the principal determinant of polar-contact capacity within this scaffold. All compounds fully satisfied Lipinski's Rule of Five, showed high predicted gastrointestinal absorption and blood-brain barrier permeability, and were classified as GHS Acute Oral Toxicity Class IV with inactive predicted hepatotoxicity and carcinogenicity. These findings constitute preliminary computational evidence supporting 2-FP and PPO as candidates for further in vitro antibacterial validation..

Copyrights © 2026






Journal Info

Abbrev

aromatika

Publisher

Subject

Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Chemistry Energy Materials Science & Nanotechnology

Description

Jurnal ini mempublikasikan artikel di bidang Kimia yang meliputi penelitian dasar dan terapan. Bentuk Publikasi di Indonesian Journal of Chemical Science and Technology : * Artikel * Review (berdasarkan permintaan Dewan Redaksi) * Communication (berdasarkan permintaan Dewan ...